Query= MSMg01no512_g02.b1 MSMg01no512_g02.b1 CHROMAT_FILE:
MSMg01no512_g02.b1 PHD_FILE: MSMg01no512_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:30 2005
(376 letters)
>mm_chr6_106392262_106393037
Length = 776
Score = 603 bits (312), Expect = e-177
Identities = 318/320 (99%)
Strand = Plus / Minus
Query: 1 gctgtacgtctatgtgtctgatgcattgggaatggaatctaactttactgggagtgtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gctgtacgtctatgtgtctgatgcattgggaatggaatctaactttactgggagtgtgct 461
Query: 61 ctgtgcacaaagatctaacaaacaaaagactagctaatgtctctaaaatgaaaacagctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctgtgcacaaagatctaacaaacaaaagactagctaatgtctctaaaatgaaaacagctt 401
Query: 121 tagtagtagaaccagatgattttattcattctttttaaactcttggaagccagaccgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tagtagtagaaccagatgattttattcattctttttaaactcttggaagccagaccgact 341
Query: 181 agtagcaatttagcaatagatgccggatcacaatacactatttctgatgatgaataatta 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 340 agtagcaatttagcaatagatgccggatcacaaaacactatttctgatgatgaataatta 281
Query: 241 ggttgtgatattggtagacattaatttttcttatctgtaaacaaaagaatacatgaaagc 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggttgtgataatggtagacattaatttttcttatctgtaaacaaaagaatacatgaaagc 221
Query: 301 aaagataaaaatctaaggtc 320
||||||||||||||||||||
Sbjct: 220 aaagataaaaatctaaggtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_g02.g1 MSMg01no512_g02.g1 CHROMAT_FILE:
MSMg01no512_g02.g1 PHD_FILE: MSMg01no512_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:31 2005
(553 letters)
>mm_chr6_106220786_106221741
Length = 956
Score = 1007 bits (521), Expect = 0.0
Identities = 546/555 (98%), Gaps = 3/555 (0%)
Strand = Plus / Plus
Query: 1 agttgtacagtgacatcaaagctgcaaactatacaaaataagcagcatgtgttcacctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttgtacagtgacatcaaagctgcaaactatacaaaataagcagcatgtgttcacctta 260
Query: 61 gatagtggggatattttattctggataaatgtgctctgcttttaagaatctagggcaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatagtggggatattttattctggataaatgtgctctgcttttaagaatctagggcaatg 320
Query: 121 ttgtctggtagacatgtactgctgcagaactgtcttagtcctgccattaattggcatcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtctggtagacatgtactgctgcagaactgtcttagtcctgccattaattggcatcta 380
Query: 181 cccaggcaattagaactatggaa-tc--cagcaaattaacaaggtatatatgaaaccttt 237
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 381 cccaggcaattagaactatggaaattaacagcaaattaacaaggtatatatgaaaccttt 440
Query: 238 aggttgtctgaaattctaaggttaaattgagataatattaaatgatcttatttgcgggat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggttgtctgaaattctaaggttaaattgagataatattaaatgatcttatttgcgggat 500
Query: 298 tattcccatctctgtgcttttacgaatgatgataaactatgcaccttcaaggaagaaaac 357
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattcccatctctatgtttttacgaatgatgataaactatgcaccttcaaggaagaaaac 560
Query: 358 actggaaggcacttttgaaacatcagaatgatgaatatgaactgaagttaaacaagactg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actggaaggcacttttgaaacatcagaatgatgaatatgaactgaagttaaacaagactg 620
Query: 418 aggcatcatatgtctatgaaaaactattagtaatggacaatttaataccattgtatatga 477
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcatcatatgtctatgaaaaactattagtaatggacaatttaataccattgtatatga 680
Query: 478 gaagtaaagaagcctggttgaagtgttagtgtcttaatgtcatcttcatagtattctccc 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaagtaaagaagcctggatgaagtgttagtgtcttaatgtcatcttcatagtattctccc 740
Query: 538 tgtttatgatttgag 552
|||| ||||||||||
Sbjct: 741 tgttaatgatttgag 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 956
Length adjustment: 10
Effective length of query: 543
Effective length of database: 946
Effective search space: 513678
Effective search space used: 513678
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
