Query= MSMg01no512_g19.b1 MSMg01no512_g19.b1 CHROMAT_FILE:
MSMg01no512_g19.b1 PHD_FILE: MSMg01no512_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:34 2005
(367 letters)
>mm_chr6_117255759_117256525
Length = 767
Score = 654 bits (338), Expect = 0.0
Identities = 347/350 (99%), Gaps = 2/350 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttccttccc-ttgttcctaacttcacatgatgccaggaggaacatgtcattgt 62
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggaattcttcc-acccattgttcctaacttcacatgatgccaggaggaacatgtcattgt 454
Query: 63 ccaagatgtgataattaagaaaaccacgtctcacagaagccatgaggcatgaccagagcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ccaagatgtgataattaagaaaaccacgtctcacagaagccatgaggcatgaccagagcc 394
Query: 123 acaattactaagcagcgaatcctggtttactattgtctatgtgccccaaaggtttccttc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 acaattactaagcagcgaatcctggtttactattgtctatgtgccccaaaggtttccttc 334
Query: 183 atgtggaatgaatctcttggttccagcaggcccagtggggagtggtgggctggcctgtca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atgtggaatgaatctcttggttccagcaggcccagtggggagtggtgggctggcctgtca 274
Query: 243 gagcagcctgaagatgcagcaactcaggtggaacctgtggttttcacagagtgagtaatg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gagcagcctgaagatgcagcaactcaggtggaacctgtggttttcacagagtgagtaatg 214
Query: 303 aagacaagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 352
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aagacaagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_g19.g1 MSMg01no512_g19.g1 CHROMAT_FILE:
MSMg01no512_g19.g1 PHD_FILE: MSMg01no512_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:34 2005
(517 letters)
>mm_chr6_117069793_117070710
Length = 918
Score = 793 bits (410), Expect = 0.0
Identities = 508/578 (87%), Gaps = 62/578 (10%)
Strand = Plus / Plus
Query: 1 cacctctccagctatttcagtgcactagcagaaaaca-tctaattcactcattatgtttc 59
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 cacctctctagctatttcagtgcactagcagaaaacagtctaattcactcattatgtttc 260
Query: 60 ctgatggctgcacttgaggctgcagtcctgacaatttgctctcactgcacaggaaacagt 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgatggctgcgcttgaggctgcagtcctgacaatttgctctcactgcacaggaaacagt 320
Query: 120 aggatggagcagtcagcctcttcagttccccacactccccacccccataaacttcttatc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 aggatggagcagtcagcctcttcagttccccacactccccacccccataaacttctcatc 380
Query: 180 tacggcatcctccactgggacactgcctgtatctgacatctttcctttgcctcgttaaga 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccgcatcctccactgggacactgcctgtatctgacatctttcctttgcctcgttaaga 440
Query: 240 taacttcagttgccctcaacaagagacaaagcagatttttccatttaaaaacataataat 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 taacttcagttgccctcaacaagagacaaagcagatttttccgtttaaaaacataataat 500
Query: 300 tatgcttgcctggttagttattggtaggaaaaatctccctcttaattatttccccttaaa 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgcttgcctggttaggtattggtaggaaaaatctccctcttaattatttccccttaaa 560
Query: 360 caatgataatagaatgtgatgttgaaaccatccttgcagcagcccttaagtccatggttt 419
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caatgataatagaatgtgatattgaaaccatccttgcagcagcccttaagtccatggttt 620
Query: 420 ttgcttatttg-----------------------------gttttttg------------ 438
||||||||||| ||||||||
Sbjct: 621 ttgcttatttgtttttttgtttgtttgtttgttttcgtgggttttttggttttttggttt 680
Query: 439 ---------------cctgatttgattttttt---atgatttcctttttgtgcctgggtg 480
||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 ttgttttttgttttgcctgatttgattttttttttatgatttcctttttgtgcctgggtg 740
Query: 481 ttttctctgcatgttaccatgtgcttg-cttggtgcct 517
|| |||||||||||||||||||||||| |||| |||||
Sbjct: 741 ttctctctgcatgttaccatgtgcttgtcttg-tgcct 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 918
Length adjustment: 10
Effective length of query: 507
Effective length of database: 908
Effective search space: 460356
Effective search space used: 460356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
