XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTAATTAAGGATTCAAGTCTTTGAGGAAGCATGTCACTGTTAGATCCATG
ATACTGAATCCCTGACTCATCAAACAGTGACAGAATAAATTTCTTTTGTT
TTAAGATATCAAGTTTGTAGTGTTATTATGGCAGTCTTAGAAATACAAAT
TGACCTGTTCGTGTTAAAGATTTATCATAATAACAAGAGAAAAACAGCTG
ATCATGCACATTTTTAATAACATACACTGAAATCAGGAAACTCTCTAAAG
AACAAATTTAAAGCTACATGAACTTTTTGAATTATCAATGAACCAAAAAA
TCACAATTTAGTAATAATAATGATAAACCTAACCTGATTTTACTTGGGAA
AAAAAATCACAGAGTAACAACTCATAGTTTATATTGTGCTCTTACGGAAT
GAATTTTATCAGTAAGTTCCATCTATCATTGTAAATTTCTTTGATCTTAT
CAGAATGAAGATAATTACTTGAACTCTATTGCATTAAAAACTATGCAAAA
TAGTTTACCACAGATTATGGTTTCTAACATCCAAAAGACAGTAAAGCATA
TTGAAACACTATCTATAAGAATAACTCCATAAACAATATCAAATTGTCAT
AATGTACCACTCCCATTTTTTAACAATGGAATGTACGCTGTCTTTATAAA
GACTTTTACCCCATCTTTTCATTGCCTGCAGTTTTAAAGA

TCTTTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCTGAGAAGCA
CCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATACAAATCAAAA
CAACCCTGAGATTCCACCTCATACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGAATTGCAAGCTTATACAACCACTCTGGAAATCAGTCT
GGTGGTTCCTCAGAAAATTGGACATAGTACTAACAGAGGATCCCGCAATA
CTTCTCCTGGGTATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAACTGGA
AAGAACCCAGATACCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATTTACACAATGAAGTACTATTCAGCTATTAAAAAGAATAAATTTATGAA
ATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CCCAATCACAAAAGAGCTCACATGATATATACCCACTGATAAGCGGATAT
TAGCCCAGGAACTTAGAATACCCTAGATATAATATACCTTTTGCCAAACA
CTTGATATTCTATAACAAGGAAAACTAAAATGTGGACCCCTT

Query= MSMg01no512_h03.b1 MSMg01no512_h03.b1 CHROMAT_FILE:
MSMg01no512_h03.b1 PHD_FILE: MSMg01no512_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:36 2005
         (598 letters)



>mm_chr6_46469377_46470373
          Length = 997

 Score = 1071 bits (554), Expect = 0.0
 Identities = 584/594 (98%), Gaps = 1/594 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaattaaggattcaagtctttgaggaagcatgtcactgttagatccatgatac 64
           |||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 946 gaattcctaagtaaggatgcatgtctttgaggaagcatgtcactgttagatccatgatac 887

                                                                       
Query: 65  tgaatccctgactcatcaaacagtgacagaataaatttcttttgttttaagatatcaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tgaatccctgactcatcaaacagtgacagaataaatttcttttgttttaagatatcaagt 827

                                                                       
Query: 125 ttgtagtgttattatggcagtcttagaaatacaaattgacctgttcgtgttaaagattta 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 826 ttgtagtgttattatggcagtcttagaaatacaaattgacctgttcctgttaaagattta 767

                                                                       
Query: 185 tcataataacaagagaaaaacagctgatcatgcacatttttaataacatacactgaaatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tcataataacaagagaaaaacagctgatcatgcacatttttaataacatacactgaaatc 707

                                                                       
Query: 245 aggaaactctctaaagaacaaatttaaagctacatgaactttttgaattatcaatgaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aggaaactctctaaagaacaaatttaaagctacatgaactttttgaattatcaatgaacc 647

                                                                       
Query: 305 aaaaaatcacaatttagtaataataatgataaacctaacctgattttacttgggaaaaaa 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 646 aaaaaatcacaatttagtaataataatgataaacctaacctgattttacttggg-aaaaa 588

                                                                       
Query: 365 aatcacagagtaacaactcatagtttatattgtgctcttacggaatgaattttatcagta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aatcacagagtaacaactcatagtttatattgtgctcttacggaatgaattttatcagta 528

                                                                       
Query: 425 agttccatctatcattgtaaatttctttgatcttatcagaatgaagataattacttgaac 484
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 527 agttccatctatcattgtaaatttctttgatcttatcagaataaagataattacttgagc 468

                                                                       
Query: 485 tctattgcattaaaaactatgcaaaatagtttaccacagattatggtttctaacatccaa 544
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 467 tctattgcattaaaaactatgcaaaatagtttaccacagattatgatttctaacatccaa 408

                                                                 
Query: 545 aagacagtaaagcatattgaaacactatctataagaataactccataaacaata 598
           ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 407 aagacagtaaagcatattgaaacgctatctataagaataactccataaataata 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 997
Length adjustment: 10
Effective length of query: 588
Effective length of database: 987
Effective search space:   580356
Effective search space used:   580356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)