Query= MSMg01no512_h18.b1 MSMg01no512_h18.b1 CHROMAT_FILE:
MSMg01no512_h18.b1 PHD_FILE: MSMg01no512_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:39 2005
(592 letters)
>mm_chr6_61878865_61879858
Length = 994
Score = 1094 bits (566), Expect = 0.0
Identities = 584/590 (98%), Gaps = 2/590 (0%)
Strand = Plus / Plus
Query: 5 gaattcagagggtggcttgtgtgggtccagacttccaatctcctgttatcactctctttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagggtggcttgtgtgggtccagacttccaatctcctgttatcactctctttt 264
Query: 65 attcttccatataatgttgtcactcttgccccagaaggattatccttctattactgttct 124
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 attcttccatataatgttgtcactcttgccccagaaggattacccttctattactgttct 324
Query: 125 attttt-ggggtctgatgcaacataaagtgtttttcttcatcatttctgtgtgtcatctt 183
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttttgggggtctgatgcaacataaagtgtttttcttcatcatttctgtgtgtcatctt 384
Query: 184 tattcgaagattcgggatctgtaaacttaacatactaacttaggaaaagaattaagtact 243
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattcgaggattcaggatctgtaaacttaacatactaacttaggaaaagaattaagtact 444
Query: 244 aggcttcctatcttgtaaatgaaaactcaggagcttatgaagcatcagtagaatgctgtg 303
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acgcttcctatcttgtaaatgaaaactcaggagcttatgaagcatcagtagaatgctgtg 504
Query: 304 gctttcatagctcttaagtggaggacttgaagattagactacatttaaccaaaatggaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctttcatagctcttaagtggaggacttgaagattagactacatttaaccaaaatggaat 564
Query: 364 agtagtgcttccacaaaactcagaagtgttattagcaatgagaaatcaaaatgatcatca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtagtgcttccacaaaactcagaagtgttattagcaatgagaaatcaaaatgatcatca 624
Query: 424 taaatcatacc-tcttaatatttttgcggtttctttttctttaatatagagctatttgat 482
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaatcataccctcttaatatttttgcggtttctttttctttaatatagagctatttgat 684
Query: 483 ctatttgccatggcaaaagtaagaaacatacttatgtgagaatgtgacattgcttttatt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctatttgccatggcaaaagtaagaaacatacttatgtgagaatgtgacattgcttttatt 744
Query: 543 actcttgctatcactgataatgattttagtatatgtcacattttaataag 592
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actcttgctatcactgataatgattttagtatatgtcacattttaataag 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 994
Length adjustment: 10
Effective length of query: 582
Effective length of database: 984
Effective search space: 572688
Effective search space used: 572688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_h18.g1 MSMg01no512_h18.g1 CHROMAT_FILE:
MSMg01no512_h18.g1 PHD_FILE: MSMg01no512_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:39 2005
(561 letters)
>mm_chr6_62057098_62058059
Length = 962
Score = 1033 bits (534), Expect = 0.0
Identities = 556/564 (98%), Gaps = 5/564 (0%)
Strand = Plus / Minus
Query: 1 tcatttaaccagaacctaaaattaaactatatatatttccatattaagctttttattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tcatttaaccagaacctaaaattaaactatatatatttccatattaagctttttattttg 703
Query: 61 tgaaagtaggaaattattaaaatcaaaagaaacatgttcataaccagtacatttctattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tgaaagtaggaaattattaaaatcaaaagaaacatgttcataaccagtacatttctattt 643
Query: 121 ttgattttccaagacatagtgactccagcttcctggtgtctaggactggaccctattgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttgattttccaagacatagtgactccagcttcctggtgtctaggactggaccctattgat 583
Query: 181 gcagtggcctccaatctctgtgtgcaacttaaatgaagagttgagatttgctccttctta 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 582 gcagtggcctccaatctctgtgtgcaacttaaatgaagagtggagatttgctccttctta 523
Query: 241 agaaagtgaatctgaatcaaaatatgaagcacattctggaatatcttgccttaggtttga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agaaagtgaatctgaatcaaaatatgaagcacattctggaatatcttgccttaggtttga 463
Query: 301 atttatcaattaatactgaaataataactaagtaaataaaatcttatttacaataaatgt 360
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 462 atttatcaattaat-ctgaaataataactaagtaaataaaatcttatttccaataaatgt 404
Query: 361 tagagaattcaatcacagatcaataaaaagaaaaacagcaaaagaatttattatctgtta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tagagaattcaatcacagatcaataaaaagaaaaacagcaaaagaatttattatctgtta 344
Query: 421 gggccattaaatttctgtaaattttaatcttcctaggtcattcatattagcagttctttt 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 343 gggccattaaatttctgtaaattttaatcttcctaagtcattcatattagcagttctttt 284
Query: 481 tgactttaactttgttcattaaaaattcaaatatccaaaattaattcatgagaaggaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgactttaactttgttcattaaaaattcaaatatccaaaattaattcatgagaaggaaat 224
Query: 541 a--atatgtacct-cttcctttgt 561
| ||||||| || ||||||||||
Sbjct: 223 aatatatgta-ctgcttcctttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 962
Length adjustment: 10
Effective length of query: 551
Effective length of database: 952
Effective search space: 524552
Effective search space used: 524552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
