Query= MSMg01no512_j11.b1 MSMg01no512_j11.b1 CHROMAT_FILE:
MSMg01no512_j11.b1 PHD_FILE: MSMg01no512_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:48 2005
(702 letters)
>mm_chr6_9254952_9256057
Length = 1106
Score = 818 bits (423), Expect = 0.0
Identities = 467/489 (95%), Gaps = 15/489 (3%)
Strand = Plus / Minus
Query: 4 ggaattccctcttggagaacctgtcccctctcacagtgccaggtgtacagaggacagatg 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggaattccctcgtggagaacctgtcccctctcacagtgccaggtgtacagaggacagatg 525
Query: 64 agatcagaacttactaataggataagcagaaaatatttcaggatttgcaaattgaacagg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agatcagaacttactaataggataagcagaaaatatttcaggatttgcaaattgaacagg 465
Query: 124 tgaaaatgtaagtgatgataattgaaagctaattattatcagctagcaattggcagccag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgaaaatgtaagtgatgataattgaaagctaattattatcagctagcaattggcagccag 405
Query: 184 gtgtgccgagtcacctgaaaggcaagtcggggaagatggtgaaga----tactttcggcc 239
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 404 gtgtgccgagtcacctgaaaggcaagtcggggaagatggtgaagatacttactttcggcc 345
Query: 240 caaataagataaaagttcagcatagcaaaatcaatcttacctttgctgtgttttggccag 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 344 caaataagataaaagttcagcatagcaaaagcaatcttacctttgctgtgttttggccag 285
Query: 300 cctggatgcagagtatgatcaaagcaaagtgattatggattttgtgtcattgacacctta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cctggatgcagagtatgatcaaagcaaagtgattatggattttgtgtcattgacacctta 225
Query: 360 tacttttctaagttggattc--------ttccaagtaagtaaaagcagaactacagtaac 411
|||||||||||||| ||||| ||| || |||||||||||||||||||||||
Sbjct: 224 tacttttctaagttagattctacttattttc--tgt-agtaaaagcagaactacagtaac 168
Query: 412 cacaaaagtcacatcttgtgactgaaagccattctgtgagcatgccgcccccactcttta 471
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 167 cacaaaagccacatcttgtgactgaaagctgttctgtgagcatgccgcccccactcttta 108
Query: 472 agaagctct 480
|||||||||
Sbjct: 107 agaagctct 99
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1106
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1096
Effective search space: 758432
Effective search space used: 758432
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no512_j11.g1 MSMg01no512_j11.g1 CHROMAT_FILE:
MSMg01no512_j11.g1 PHD_FILE: MSMg01no512_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:48 2005
(259 letters)
>mm_chr6_9189010_9189668
Length = 659
Score = 453 bits (234), Expect = e-132
Identities = 248/255 (97%), Gaps = 4/255 (1%)
Strand = Plus / Plus
Query: 1 cataacttggaaaatatagtatggaccctttgaaagtagactttcattttcccatcacat 60
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 cataacttggaaactatagtatggacccgttgaaagtagactttcattttcccatcacat 260
Query: 61 cctctggtaactagtattcaactcttttatctattttggagcatggagtatgtgattgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctggtaactagtattcaactcttttatctattttggagcatggagtatgtgattgta 320
Query: 121 tttcaatgagtgagttcttttactttatgggatgtcttctgcatgttctcttgttacgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcaatgagtgagttcttttactttatgggatgtcttctgcatgttctcttgttacgtg 380
Query: 181 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttgnctgtt 240
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 381 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt----ctttgtctgtt 436
Query: 241 ttaatctgctcatgc 255
|||||||||||||||
Sbjct: 437 ttaatctgctcatgc 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space: 162500
Effective search space used: 162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
