BAC Information

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BAC

Clone NameMSMg01-512L11
Chromosome6 (Build37)
Map Location 56,873,169 - 56,873,739
singlet/doubletsinglet
Overlap geneNt5c3
Upstream geneCcdc129, Gsbs, LOC100041357, Pde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, LOC100042327
Downstream geneV1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512L11.T7 (MSMg01no512_l11.b1)MSMg01-512L11.TJ (MSMg01no512_l11.g1)
ACCAG585611AG585612
length750765
length of high quality
(start - end)		663 (40 - 702)570 (68 - 637)
definitionCHROMAT_FILE: MSMg01no512_l11.b1 PHD_FILE: MSMg01no512_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:58 2005CHROMAT_FILE: MSMg01no512_l11.g1 PHD_FILE: MSMg01no512_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACA
TCCTTAATCATCAGGGAAATGCAAATCAAAACAACACGGAGATTCCACTT
CACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCT
GGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTCGGATTGC
AGGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATT
GGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATC
CAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATACT
ACTCAGCTATTAAAAAATGAATTTATGAAATTTTTAGGCAAATGGATGGA
CCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAAAGGAACTCGC
ACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGATAC
CCAAGATATAAGATACAACTTGCCAAACGCATGAAATTCAAGAAGAACGA
AGACCAAAGTGTGTACACTCTACCCTTTCTTAGAAATTGGAACAAAACAN


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTGAGACAACAATTTAAACGAGACTGCAATTAA
CTCTTAAAAGTACATTTCTAGGATTTAGGAAAGAGTTTTGGGGGACTGAC
ACATGAATACTTCTTGGAACATAAAACAAGGAAGAACATTCAAATAATCG
AGCTGTTTCAATATTGGCATTTCTAAAAAAACACTGAAAATGCTCTTTTC
ATAACGTAAGCCAAGGCAGCCCCGATGATGTAAAACAAACAAACAAACGA
ACCAACCAACCAACCAACCAACCGACTCCTGGACAAGAGACTATCGGATT
AGCTGCACGTCTTGGAGGCGGTTGCCAACCGGAGATTAGCTCTGGAGAAA
CGGGTTTTGCAGCAAGAGGTAGTTATCTCCGAGCATCTATTCTCTCCACT
CTTTGAAACAAACGCTGTCAAGCATCAGCACGCGTGCAGGCTGCCCTCGC
AGGGCCGCGGCCGGCCCACGCCACTTGGGCTGCTCGCGCGCGAGCCGATG
CTCCCGCACTCACCATTTCGATGATCTTGGTCTTGCGGCCCGTTTTTCTC
TTCAAGGTGAATATGTACTGGGCCAGCACCACGCCTGCTACCACCGCGCA
CACACTGGNGCTCGCCACCGCGCCCACTCGCGCCACGGNCGCGCGGTCCA
TTGACAGGCCCGCGTGCTCTCGGCGCGGAAGCCCGGGATCCGCGGGTACG
AGCCCAGGNCGCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_l11.g1 MSMg01no512_l11.g1 CHROMAT_FILE:
MSMg01no512_l11.g1 PHD_FILE: MSMg01no512_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:58 2005
         (570 letters)



>mm_chr6_56872970_56873939
          Length = 970

 Score = 1081 bits (559), Expect = 0.0
 Identities = 568/571 (99%), Gaps = 1/571 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagacaa-caatttaaacgagactgcaattaactcttaaaagtacatttctaggattt 59
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttgagacaaacaatttaaacgagactgcaattaactcttaaaagtacatttctaggattt 259

                                                                       
Query: 60  aggaaagagttttgggggactgacacatgaatacttcttggaacataaaacaaggaagaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aggaaagagttttgggggactgacacatgaatacttcttggaacataaaacaaggaagaa 319

                                                                       
Query: 120 cattcaaataatcgagctgtttcaatattggcatttctaaaaaaacactgaaaatgctct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cattcaaataatcgagctgtttcaatattggcatttctaaaaaaacactgaaaatgctct 379

                                                                       
Query: 180 tttcataacgtaagccaaggcagccccgatgatgtaaaacaaacaaacaaacgaaccaac 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 380 tttcataacgtaagccaaggcagccccgatgatgtaaaacaaacaaacaaaccaaccaac 439

                                                                       
Query: 240 caaccaaccaaccaaccgactcctggacaagagactatcggattagctgcacgtcttgga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caaccaaccaaccaaccgactcctggacaagagactatcggattagctgcacgtcttgga 499

                                                                       
Query: 300 ggcggttgccaaccggagattagctctggagaaacgggttttgcagcaagaggtagttat 359
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggcggttgccaactggagattagctctggagaaacgggttttgcagcaagaggtagttat 559

                                                                       
Query: 360 ctccgagcatctattctctccactctttgaaacaaacgctgtcaagcatcagcacgcgtg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctccgagcatctattctctccactctttgaaacaaacgctgtcaagcatcagcacgcgtg 619

                                                                       
Query: 420 caggctgccctcgcagggccgcggccggcccacgccacttgggctgctcgcgcgcgagcc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caggctgccctcgcagggccgcggccggcccacgccacttgggctgctcgcgcgcgagcc 679

                                                                       
Query: 480 gatgctcccgcactcaccatttcgatgatcttggtcttgcggcccgtttttctcttcaag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gatgctcccgcactcaccatttcgatgatcttggtcttgcggcccgtttttctcttcaag 739

                                          
Query: 540 gtgaatatgtactgggccagcaccacgcctg 570
           |||||||||||||||||||||||||||||||
Sbjct: 740 gtgaatatgtactgggccagcaccacgcctg 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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