BAC Information

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BAC

Clone NameMSMg01-512L14
Chromosome6 (Build37)
Map Location 56,408,103 - 56,408,650
singlet/doubletsinglet
Overlap genenone
Upstream geneAdcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512L14.T7 (MSMg01no512_l14.b1)MSMg01-512L14.TJ (MSMg01no512_l14.g1)
ACCAG585617AG585618
length1,560781
length of high quality
(start - end)		---551 (67 - 617)
definitionCHROMAT_FILE: MSMg01no512_l14.b1 PHD_FILE: MSMg01no512_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:59 2005CHROMAT_FILE: MSMg01no512_l14.g1 PHD_FILE: MSMg01no512_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATATAGGAGAGCTGCGCTATGAGCCTCTCGTGCTTCTTAATTTCTTCT
TGCTCACTATACCTAGTCGGCCTGACCGGCGCGTCTCGTTCTCATCTTTA
TCCTTCTCATCATCATCGATTGCACAATATAAGGTAGTAGAAGCATGCGA
AAGTGCAGGAGGAGGAGAAGATAGAATTTTTTGACGGTCGCGGCGCCTAG
GCACTTCTCAACCACGCTTCTCGTGTGAGCGACCTTGTTTTGACTCTGCC
ACNCGTGACTTGTATGAATAAATGATACGGACGCATGGCGAGCCATTNCA
CTCGCATCACATGTCGCGCCGCCTCGTATATAAGCTCGCAGTGTNGTCTG
CGGTGCTGTGTGTGCTCCTTACGTCGCGCTCCGTGTTGTCTCCGTCTGTC
TGTACCGCATGCGCGTTCTGTCGNATGTGGTATTGAGTATACATACGTTC
CGATGTANGTATGGCACAGTCACCTGCGCCCGGGGCACATTCATGGTACN
TGTCTACGACACATGCTTCGCGCGGCGCCTGCCCAAATACGAGATCTCCA
TCGCGACTTATCTCGAACCAACTCTACAATACAANCTGTAGTCTTCGCCC
GCATTATTTAATACCTCCTGGTTCTGTCTAGTCGGACCCGGCACGCACAC
ACGCGACATTATACTGTGCCGTTCAGATGTATATCGGGATAAACCTACTT
CAGTGCAACGCTTTTGTCTGCTTATACTTATCATCTACTATCTAACACCT
CACATAATATTAAGTATTTTCGCGTACTACATGCGTCTATTATTACGCAT
CATAGTAGACAGCTACGAGACGACAGTGGACATTAGCTCACGCCGTATAC
TCCCACTATGCGCTATTCTAACCCCACGCACCTTCGCCCGATATTTAACT
GTATGTCCTCTGTAGCGGTCGANCGAAAGACCTCTATTATGTAGATATAT
ATCGTCGCGTCANGCGGGACCTATTCGAGACACATATCCGTTAGTGATAT
ATGTGTATTTCCGCATATATGCCNGCCATCTATACCGCGCGTAAGAGTAT
AACAATAGCAGTCCGACATNTCGTCCTAGNCGAGTCGCGTGTCGAGTACG
ACATACGATAAGCACAGNAGTCTCGCAACGCTCATAACTGTACCGTGCTG
TACTGCGCGTGTCGCATCATATGCGTATNACGCGCTGNTCACGGTAAGAC
ACGCGNAGACATATCTGCGCGACACGCCATCTACTAACCATAGTGCGATA
NCNGCGAGCTCGCGATATTCCACGACGCTCTACCGCCTTATATTCACATT
ACACCATTTATAGTGACGCATCGTACTATATCGATGTCCCGTACTTCGCA
CTCATCAACGCACGTATTAGCCANATAGACTNGTAATCATGCATGCTGAA
CGCGACTCCCCCTCCGCTTGCGCGCTNATATGTCACTCTATCGACGCGCA
CACAACTGTNACTCTTCGTCATACATACCGCGCGCGCGCTCTGGGTGTAC
GATGCGCTATATTTATCTCTATTGTCGCTCATTAGTAGCGGATGGCTCGC
CGACATATAG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTTTTTTATAAAGATGACATCACCAGGATGATC
TCCTTCTTCTTCGTAGTTTCCCAAGACGTTTTCATCTCATTTTATATGTT
TTGTTTCTTTCTAATTTTATTTTACTTTTATGTTACTTTTATGTGTTTTA
CCTCCATGTTTATGTACTGCATGCATGCAGTTCCCATATAGGCCAGAAGA
GGGTGCTGGATCCCCTAGAATTGGTTGCGAGCAGCCATGTAGATGCTGAG
AATGAAATTTCTCATGCATTTTCCTCTGGAAACACAGCCAGTGCTCTTAA
CTGAGGAAGCACATATTCATCCCCCTTGTCTCTTGAAACCATATATAATG
GTGATGTGCTTTATTCTGATCTGAAGAATTATAAGTTACCTTTAAATTCA
AAAATTGTATATTCCATTTTTATATCCACATTATCATCAGAAACTTATTA
ATATACATGGATATCTCTTGATATGAAATAATGGAATTCGCTCCCTCTCT
GCTCATTGCTACTTTATAAATGTCTAGCTCTTTATTGTTGAGTTGTCTGA
ACACTGAGCTGTTTCACCGCTAAGAACTACATTTTGCATTATACTTGTTT
GCCTGGTTTTCTGTGTTCAGCGGCTCTTTAGCATCATAATGTATGCTCTA
TAGCAATACTGTGCAATCCGGCAGATGAAATCTATGTGTGTCATTTTATA
TTTTTGGTTGTGAGCCTAGTTTTAATGGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_l14.g1 MSMg01no512_l14.g1 CHROMAT_FILE:
MSMg01no512_l14.g1 PHD_FILE: MSMg01no512_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:59 2005
         (551 letters)



>mm_chr6_56407901_56408850
          Length = 950

 Score =  932 bits (482), Expect = 0.0
 Identities = 533/550 (96%), Gaps = 3/550 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ttttttataaagatgacatcaccaggatgatctccttcttcttcgtagtttcccaagacg 62
           ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 203 ttttttataaagatgacatcaccagaatgatctccttcttcttcttagtttcccaagacg 262

                                                                       
Query: 63  ttttcatctcattttatatgttttgtttctttctaattttattttacttttatgttactt 122
           ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttttcatctcaattaatatgctttgtttctttctaattttattttacttttatgttactt 322

                                                                       
Query: 123 ttatgtgttttacctccatgtttatgtactgcatgcatgcagttcccatataggccagaa 182
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 323 ttatgtgttttacctccatgtttgtgtactgcatgcatgcagttcccatataggccggaa 382

                                                                       
Query: 183 gagggtgctggatcccctagaattggttgcgagcagccatgtagatgctgagaatgaaat 242
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 383 gagggtgctggatcccctagaattggttgtgagcagccatgtagatgctgagaatgaaat 442

                                                                       
Query: 243 ttctcatgcattttcctctggaaacacagccagtgctcttaactgaggaagcacatattc 302
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 443 ttctcatgcattttcctctggaaacacagccagtgctcttaactgcggaagcacatattc 502

                                                                       
Query: 303 atcccccttgtctcttgaaaccatatataatggtgatgtgctttattctgatctgaagaa 362
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctcccccttgtctcttgaaaccatatataatggtgatgtgctttattctgatctgaagaa 562

                                                                       
Query: 363 ttataagttacctttaaattcaaaaattgtatattccatttttatatccacattatcatc 422
           ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 563 ttataagttacctttaaattcaaaa-ttgtatattccatttttatctccacattatcatc 621

                                                                       
Query: 423 agaaacttattaatatacatggatatctcttgatatgaaataatggaattcgctccctct 482
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agaaacttattaatatacatagatatctcttgatatgaaataatggaattcgctccctct 681

                                                                       
Query: 483 ctgctcattgctactttat-aaatgtctagctctttattgttgagttgtctgaacactga 541
           ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctgctcactgctactttatgaaa-gtctagctctttattgttgagttgtctgaacactga 740

                     
Query: 542 gctgtttcac 551
           | ||||||||
Sbjct: 741 gatgtttcac 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 950
Length adjustment: 10
Effective length of query: 541
Effective length of database: 940
Effective search space:   508540
Effective search space used:   508540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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