Query= MSMg01no512_l20.b1 MSMg01no512_l20.b1 CHROMAT_FILE:
MSMg01no512_l20.b1 PHD_FILE: MSMg01no512_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:00 2005
(621 letters)
>mm_chr6_13361944_13362964
Length = 1021
Score = 978 bits (506), Expect = 0.0
Identities = 594/630 (94%), Gaps = 14/630 (2%)
Strand = Plus / Minus
Query: 6 aattccccaaagaaaggggttacatactaccaaatcttaaagcccagcacagggttctac 65
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 943 aattccccaaagaaagggattccatactaccaaatcttaaagcccagcacagggttctac 884
Query: 66 atggtaaatgttcatagaaacttctggactggaaaagct-a------a----tctcact- 113
|||||||||| |||||||||||||| ||||||||||||| | | |||||||
Sbjct: 883 atggtaaatgctcatagaaacttctagactggaaaagctcacttctcacttttctcactt 824
Query: 114 --tctcaatattctttttcttttatttactccttttactccacaggagctgttcatatca 171
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 823 aatctcaatattctttttcttttatttactccttttactccgcaggagctgttcatatca 764
Query: 172 gaataagaagctgctggccctccccttcaaacatatactaaaatttccttatctttcatg 231
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 763 gaataagaagctgctggccctccccttcaaacacatactaaaatttcctcatctttcatg 704
Query: 232 aaaaaagtcactagtatgttatttcctgtccacttctatcagcactagaatgtaattctc 291
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 703 aaaaaagtcactagtatgttatttcatgtccacttctatcagcactagaatgtaattctc 644
Query: 292 tttgtttgaaaaaaaaaaaaaaggtcttggtaagttgtttcagctgatctacaactctca 351
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||
Sbjct: 643 tttgtttgaaaaaaaaaaaaaaggtcttggtaagctggttcagctggtctacaactccca 584
Query: 352 gactcaaattctccctctaccacagtctctgcagtacccgtactgcaggccttccttgcc 411
||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 583 gactcaaatgctccctctaacacagtctctgcagtacccgtactgcaggccttctttgcc 524
Query: 412 ttttgttgtacaagttttatttcctccctcaaaagttatcaactttctgagttcttgttg 471
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 523 ttttgttgtacaagttttatttcctccctcaaaagtcatcaactttctgagttcttgttg 464
Query: 472 gttggtcatttttgtcatttccttccatcaagaacatcacaatatcatgtttctctccaa 531
|| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 463 gtcggtcatttttgtcatttccttccatcaaaaacaccacaatatcatgtttctctccaa 404
Query: 532 acttcatgtggttagcaaatagtttcagtaaagttagggaacggaaaacaaaaacaaacc 591
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 403 acttcatgtggttagcaaatagtttcagtgaagatagggaacggaaaacaaaaacaaacc 344
Query: 592 agtaaacgctctttaatgctgtttcctttg 621
|||||||||||||||||||||||| |||||
Sbjct: 343 agtaaacgctctttaatgctgttttctttg 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_l20.g1 MSMg01no512_l20.g1 CHROMAT_FILE:
MSMg01no512_l20.g1 PHD_FILE: MSMg01no512_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:00 2005
(569 letters)
>mm_chr6_13199403_13200371
Length = 969
Score = 1009 bits (522), Expect = 0.0
Identities = 558/570 (97%), Gaps = 1/570 (0%)
Strand = Plus / Plus
Query: 1 aatcaagctatgatcaaagaacactaggaatgaatgtgaagggcagtgtttctcttactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcaagctatgatcaaagaacactaggaatgaatgtgaagggcagtgtttctcttactt 260
Query: 61 ggcttcctccttcttggcatttaaatacaatgtatttgtatataaggtttaaaaaaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcttcctccttcttggcatttaaatacaatgtatttgtatataaggtttaaaaaaataa 320
Query: 121 aatgtatttgtatattaaagcaaacaataattatctgagtaattcagtgacttccttcca 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 aatgtatttgtatattaaagcaaacaataactatctgagtaattcagtgacttccttcca 380
Query: 181 gaaacatgtaacatattatactaggtaatatataattatataactatgtaacaatatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 gaaacatgtaacatattatactaggtaatatataattatataactatgtaacagtatttt 440
Query: 241 atatattatgttacatataaacatatcaaacaaaaaaatcacaatataatacacatagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 atatattatgttacatataaacatatcaaacaaaaaaatcacaatataatacacataaaa 500
Query: 301 aactaacaaatatcagaagtacaataaagtttaaaatgtacacttttttt-caacaaatg 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 aactaacaaatatcagaagtacaataaagtttaaaatgtacacttttttttcaacaaatg 560
Query: 360 gtgctggcacaactggcacttatcatgtagaagaaagcgaattgatccattcctatctcc 419
|||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||
Sbjct: 561 gtgctggcacaactggcagttatcatgtagaagaatgtaaattgatccatttctatctcc 620
Query: 420 ttgtactaaggtcaagtctaagtggatcaaggaactccacataaaaccagagacactgaa 479
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 ttgtactaagatcaagtctaagtggatcaaggaacttcacataaaaccagagacactgaa 680
Query: 480 acttatagaggagaaagtggggaaaagcctcaaagatatgggcacaggggaaaacttcct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttatagaggagaaagtggggaaaagcctcaaagatatgggcacaggggaaaacttcct 740
Query: 540 gaatagaacagcaatggcttgtgctgtaag 569
||||||||||||||||||||||||| ||||
Sbjct: 741 gaatagaacagcaatggcttgtgctataag 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
