BAC Information

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BAC

Clone NameMSMg01-512O19
Chromosome6 (Build37)
Map Location 120,814,655 - 120,815,128
singlet/doubletsinglet
Overlap geneBcl2l13
Upstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1
Downstream geneBid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512O19.T7 (MSMg01no512_o19.b1)MSMg01-512O19.TJ (MSMg01no512_o19.g1)
ACCAG585771AG585772
length747763
length of high quality
(start - end)		678 (39 - 716)569 (69 - 637)
definitionCHROMAT_FILE: MSMg01no512_o19.b1 PHD_FILE: MSMg01no512_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:15 2005CHROMAT_FILE: MSMg01no512_o19.g1 PHD_FILE: MSMg01no512_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
AGAGAACTACCTGCCTCTGCCTCCTGAATGTGGGGATTAAAAGCATGCCA
CCCTGCCTGGCAATCTTAACTATTTTTAAAGTTAAATTTAAACTGGAAAC
TCAAAAAATTTTAAAATCAAGCATTCTAACACAATCCAATACAAAGCTGT
ATTCGTTTGGCACTTGTGTGCTGAAGGATGATGGTAGGAAATGTTAAGTC
TTTGTTTCTGTAAGAGCAGAAAACTTCAAGCTGGGTGTAGTGGCAGACAC
CTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGTGATCTCCGTGATTTGG
AGGCCAGCCTGTTCTGTGTAGTTCCAGTACAGTTAGGGTTATATTGTGAG
ACCCTGTCTTGAAAAAAAAAAAAAAAACAAAACAAACAACAAAAGAGCAG
AAAACTTCCTTTCTGCCTTAAAAACACTGTAGTCATAACAGGTAGTCTTG
AGATAAAAGATTTCAGACACCCCTTGCTTTCTTGGTGTTACATGGCATCC
ATGCAGAGCACACATGTTTAGTGTTCAGAACAAAGACCATGTGCAGTCAG
CTGAGTGCTGCCAGTAACACCTCAGACGTAATATGTTTGTTTTTTTGAAT
TTTTGTTAATTATCCACTTAGAAACCTTTAACTTTTACTATTGCCCAAGT
TTTTTGTAACCCCCACTTTCAATTATGCAATCCTGCATGGGAACAAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGACAGCCTTGTCTACAAATTGAGTTCCAA
GACAGTCAGAGAAACCCTGTCTCAAACAAACAAAAAGCTGGGCAAGGTAG
CATTCTAGGGAAGTGGAGGCAGGATGACCAACCTTGGCTAAATGGTGAAT
CTGAAGTCAACCAGGGGTCCAATGAGATGATTTCAAAAAACATAATAAAC
AAAGAAAAAAGAAAAGAACGGGGGAAGCCGGCCTTGGGGGCACACGCCTT
TAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAATTCGAGGC
CAGCCTGGTCTACAGAGTGAGTTCCAGGACAACCAGGGCTACACAGAGAA
ACCCTGTCTCAAAAAAAAACCAAAAAAGAAAGGAAGAACAGAACAGGGGT
ATGTGTTTATGACAGTCCATGAAACTAAGGTATTTACTGTTAAGAACAAG
AGTTATGAGGTACTTGGAAAGATTACATAATCACTATACATACTAATCTT
GTCTGAAACACGAAATTGATAGGTCCTGGGCTGAAGAGATGGCTCAGCAG
TTAAGAGCACTAACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAA
CCACATGGTAGCTCACAACCACCCATAATGAAATCTGACGCCCTCTTCTG
GGGTGTCTGAACAGTTACAGTGTACATACCTACCATAAATAAATAAAATC
TTTTTTAAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_o19.g1 MSMg01no512_o19.g1 CHROMAT_FILE:
MSMg01no512_o19.g1 PHD_FILE: MSMg01no512_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:15 2005
         (569 letters)



>mm_chr6_120814655_120815623
          Length = 969

 Score =  878 bits (454), Expect = 0.0
 Identities = 469/474 (98%), Gaps = 1/474 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccttgtctacaaattgagttccaagacagtcagagaaaccctgtctcaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 caggacagccttgtctacaaattgagttccaagacagtcagagaaaccctgtctcaaaca 415

                                                                       
Query: 61  aacaaaaagctgggcaaggtagcattctagggaagtggaggcaggatgaccaaccttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aacaaaaagctgggcaaggtagcattctagggaagtggaggcaggatgaccaaccttggc 355

                                                                       
Query: 121 taaatggtgaatctgaagtcaaccaggggtccaatgagatgatttcaaaaaacataataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 taaatggtgaatctgaagtcaaccaggggtccaatgagatgatttcaaaaaacataataa 295

                                                                       
Query: 181 acaaagaaaaaagaaaagaacgggggaagccggccttgggggcacacgcctttaatccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 acaaagaaaaaagaaaagaacgggggaagccggccttgggggcacacgcctttaatccca 235

                                                                       
Query: 241 gcacttgggaggcagaggcaggcggatttctgaattcgaggccagcctggtctacagagt 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 234 gcacttgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacagagt 175

                                                                       
Query: 301 gagttccaggacaaccagggctacacagagaaaccctgtctcaaaaaaaaa-ccaaaaaa 359
           ||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 174 gagttccaggacagccagggccacacagagaaaccctgtctcaaaaaaaaaaccaaaaaa 115

                                                                       
Query: 360 gaaaggaagaacagaacaggggtatgtgtttatgacagtccatgaaactaaggtatttac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gaaaggaagaacagaacaggggtatgtgtttatgacagtccatgaaactaaggtatttac 55

                                                                 
Query: 420 tgttaagaacaagagttatgaggtacttggaaagattacataatcactatacat 473
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 54  tgttaagaacaagagttatgaggtacttggaaagattatataatcactatacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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