BAC Information

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BAC

Clone NameMSMg01-513C01
Chromosome6 (Build37)
Map Location 42,366,144 - 42,366,540
singlet/doubletsinglet
Overlap genenone
Upstream geneEG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135
Downstream geneTas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513C01.T7 (MSMg01no513_c01.b1)MSMg01-513C01.TJ (MSMg01no513_c01.g1)
ACCAG585924AG585925
length749832
length of high quality
(start - end)		657 (37 - 693)184 (66 - 249)
definitionCHROMAT_FILE: MSMg01no513_c01.b1 PHD_FILE: MSMg01no513_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:31 2005CHROMAT_FILE: MSMg01no513_c01.g1 PHD_FILE: MSMg01no513_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGG
AATATCAAGGAAGCCAAGCAGTCAAGAAAAGAGTGAAGAGGATTTGGGTT
GGATGTGTTCAAGACAATGTAGGCACGCATGAAAGTGCCAAAGAACAAAT
TAAAAATATTCTTCTACAAAATCTGAGAAGATGTCTGGCTACAAGGAGAT
GATTTCAGGTTTAAGCATTTCCTTTTGCCTTCAGACTTGAGCTTTCCTCT
TGAGGTAGAAAGCAAACAGAGTTATGAGAGAGCTGCGGCACGATACAATT
TGTATTTTTAATGAATCCTACTGACTATTGTGTCGAAAATAAACAGAAGG
CAAAAGAACAGTAGGAGCTGCAGAACCAGTTAGGAGGCAACTGTAACAAT
ACAGCCATGTAATAACAGTGGCTTGCACCAGACCATAACCATGAAAATAG
TGAATTACAACAGAACTAAAAACACTCTTGAAGGTGGACAATAGAACTCT
ATCCCTAATGTTTTCAAACCTTTGTGACACAATCTGATCTCAGAATATCG
TAGGCACAATTTAACTTCTTATGGAACCAAAACCTTGAAGTGTGTCAGCT
ACAAATGCTTAGCTCTAGGTAAAGTGATGTGGCACCCCAGTTGCTGAGTG
ATTTGATATTGACTGTAAAAGATTTTGACCAAAGCAACTAAAGGATGAAG
ATGTCACATACTGACACAAAGCTAACAAAAAGAAAACAGTGAAAGATTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTGGTACCATGAACTCTGACATCTGAATTGAAGC
CATTAAAATAAACCTTTATCATCAAAAGATGGCCTAGTCGGCCATCACTG
GAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGG
AACGCCAGGGCCATAAAAGGGGAGTGGGTGGGTAGGGGAGAGGGGGTGGN
TNNNNTTNNCGNTNNTTTTTTTTATTTTTTGGGATGNTTTNNTTTTTTTT
ATTTTTTATTATTTTAATAGATCAGCTTCGCGCAGCAAGGAGAGCGCGGT
AAACGTCTGTAAGTACGCGGGTAGTTTCCCACTGTCTCTTCTTATCGGAG
TGTCCTTGCGACATTTATGTTTTTTGTCACCACAGCTCTTTTTCTCGCCT
TCTTCTCACTTGCACTTTACTCCTAAGTAAGTGTTTCGTTTCGTTGTTGA
CTTTCTTCTTCTTTTCTGTATCTTTTGTTTTTTTTCTCTTTTTTTGTGTG
AACACGCTTCACCTTTTTCCTTTTTTATCACGCTTATTTCTTTTTTCTAT
ACGCTCTTTTCTCTGATTTTCAGATTCTTCTTACATTTAGTCTTTCCTCT
TCCTTTATTTAATGACGATGTTTCATACATTCACGCTCTTCTTTATATAT
CTGCATTAGCTCCACATACCTGCTTCTTTTTTTTATTATACTCTCCCCTC
TCCATCAACCCCTTTTATTCAAATACTCCATTCCACACCTTATCACAATA
TTCAACAATTTATCATATATCACCCTCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_c01.b1 MSMg01no513_c01.b1 CHROMAT_FILE:
MSMg01no513_c01.b1 PHD_FILE: MSMg01no513_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:31 2005
         (657 letters)



>mm_chr6_42366144_42367200
          Length = 1057

 Score =  721 bits (373), Expect = 0.0
 Identities = 391/397 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggaatatcaaggaagccaagcagtcaagaaaagagtgaagaggatttgggtt 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gaattcaaggaagatcaaggaagccaagcagtcaagaaaagagtgaagaggatttgggtt 338

                                                                       
Query: 65  ggatgtgttcaagacaatgtaggcacgcatgaaagtgccaaagaacaaattaaaaatatt 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 337 ggatgtgttcaagacaatgtaggcaggcatgaaagtgccaaagaacaaattaaaaatatt 278

                                                                       
Query: 125 cttctacaaaatctgagaagatgtctggctacaaggagatgatttcaggtttaagcattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cttctacaaaatctgagaagatgtctggctacaaggagatgatttcaggtttaagcattt 218

                                                                       
Query: 185 ccttttgccttcagacttgagctttcctcttgaggtagaaagcaaacagagttatgagag 244
           |||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||
Sbjct: 217 ccttttgccttcagacttgagctttattcttgaggtagaaagcaagcagagttatgagag 158

                                                                       
Query: 245 agctgcggcacgatacaatttgtatttttaatgaatcctactgactattgtgtcgaaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 agctgcggcacgatacaatttgtatttttaatgaatcctactgactattgtgtcgaaaat 98

                                                                       
Query: 305 aaacagaaggcaaaagaacagtaggagctgcagaaccagttaggaggcaactgtaacaat 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 97  aaacagaaggcaaaagaacagtaggagctgtagaaccagttaggaggcaactgtaacaat 38

                                                
Query: 365 acagccatgtaataacagtggcttgcaccagaccata 401
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  acagccatgtaataacagtggcttgcaccagaccata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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