Query= MSMg01no513_l08.b1 MSMg01no513_l08.b1 CHROMAT_FILE:
MSMg01no513_l08.b1 PHD_FILE: MSMg01no513_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:18 2005
(674 letters)
>mm_chr6_140465751_140466824
Length = 1074
Score = 1067 bits (552), Expect = 0.0
Identities = 552/552 (100%)
Strand = Plus / Minus
Query: 5 gaattcagacaactctaccactccctaaagaacgctaattagcaatattctgtagtagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gaattcagacaactctaccactccctaaagaacgctaattagcaatattctgtagtagca 493
Query: 65 tagattaaatagatatttagcgtaccaatgggaaggacgctaacagcaagctagaaagag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tagattaaatagatatttagcgtaccaatgggaaggacgctaacagcaagctagaaagag 433
Query: 125 ccaagttcaggcgctagttcttacaccttatctctttagacatggaacctacttctgacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ccaagttcaggcgctagttcttacaccttatctctttagacatggaacctacttctgacc 373
Query: 185 cacatgtaagctaccacaatttgaagtagcccaacagctctactgtagatgaagccattc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cacatgtaagctaccacaatttgaagtagcccaacagctctactgtagatgaagccattc 313
Query: 245 tttttaagagtcaaattgacaaagtaaataattcagttcaaacagaaaatgctaatgact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tttttaagagtcaaattgacaaagtaaataattcagttcaaacagaaaatgctaatgact 253
Query: 305 taatttacctattcttttacaatacttgaaaattgtatgtgcattgattgtatttgagtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 taatttacctattcttttacaatacttgaaaattgtatgtgcattgattgtatttgagtg 193
Query: 365 ttccaggtgcacgcagtgcctgaggctgccagcagagggaggtgcattccttggaactgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ttccaggtgcacgcagtgcctgaggctgccagcagagggaggtgcattccttggaactgg 133
Query: 425 agctatagatggttttgagggaccatgctgataaccagtcttgggtcctctggaagagca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 agctatagatggttttgagggaccatgctgataaccagtcttgggtcctctggaagagca 73
Query: 485 gccactgctcttaaccactaagccaactctctagcttcttaacttgtctattctctccac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 gccactgctcttaaccactaagccaactctctagcttcttaacttgtctattctctccac 13
Query: 545 tctatgtactta 556
||||||||||||
Sbjct: 12 tctatgtactta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_l08.g1 MSMg01no513_l08.g1 CHROMAT_FILE:
MSMg01no513_l08.g1 PHD_FILE: MSMg01no513_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:18 2005
(657 letters)
>mm_chr6_140312688_140313744
Length = 1057
Score = 1218 bits (630), Expect = 0.0
Identities = 656/676 (97%), Gaps = 19/676 (2%)
Strand = Plus / Plus
Query: 1 aatcccaggccccacatggtagaaggatcaaacagacaacttgcatgcatgcatccaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcccaggccccacatggtagaaggatcaaacagacaacttgcatgcatgcatccaata 260
Query: 61 aatacatgtgggtttgtttttaaaataaatcatttttaaaggaagaacagatatgatggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatacatgtgggtttgtttttaaaataaatcatttttaaaggaagaacagatatgatggt 320
Query: 121 acatgcctttaaatccagcacccaagcagtagagacaggtgagttcaaagccagcctggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgcctttaaatccagcacccaagcagtagagacaggtgagttcaaagccagcctggt 380
Query: 181 ttgcagagcaagttctaggccagtcaggggaaacatgaagagactctctctctctctaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcagagcaagttctaggccagtcaggggaaacatgaagagactctctctctctctaaa 440
Query: 241 gaaaaagaggaaaagaaataagaagaggaggagaaggagaaggagggtacaaactaatcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaaagaggaaaagaaataagaagaggaggagaaggagaaggagggtacaaactaatcc 500
Query: 301 taggcaatatttacacttgtgtgtgtgtgt------------------gtgtgtgtgtac 342
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 taggcaatatttacacttgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtac 560
Query: 343 tagagtacagtatcctcagaggccagaagagagtgtctgtcagatcctccaaagctgtag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagagtacagtatcctcagaggccagaagagagtgtctgtcagatcctccaaagctgtag 620
Query: 403 ctacaggcacctgtaagggactttatgtccaaagtcagacataaaaagtgctcttaacta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctacaggcacctgtaagggactttatgtccaaagtcagacataaaaagtgctcttaacta 680
Query: 463 ctggttcacttctctacctgcacctggcttttatttttgtgatgtatttcatcatcctac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggttcacttctctacctgcacctggcttttatttttgtgatgtatttcatcatcctac 740
Query: 523 ccaacaagagaaaacactgctgcggctaaaagtgatatgttaccacaggctcttgcgttt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaacaagagaaaacactgctgcggctaaaagtgatatgttaccacaggctcttgcgttt 800
Query: 583 gaacactacctggtggcactgtttcagaaggttgtgagcctttaagaggtggagtctcgc 642
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 801 gaacactacctggtggcactgtttcagaaggttgtgagcctttaggaggtggagtctcgc 860
Query: 643 taaaaaaa-gtgagat 657
|||||||| |||||||
Sbjct: 861 taaaaaaaagtgagat 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
