TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
GGCTCTGTTCCTCTGTAGGCAAGTTACGAAGATTTATGAGCATGGCAGCC
GGGCTGGTGCCGAGAAACTGAAGCGCTGAGACCAGAGTAGTCTTTTCTTT
TTCTTTTTTACATTTTGGAATGCTTTTTAAATTTGATGATATTCGCATGT
ACATAATGAGATCCCTTGTGAGGATGGAAGCCAAGTCAAAGGGAAAACAC
ATTTATGTTTCATATGTACCAGATACACATAGCTCAAAGCTAATTTTAAA
TAAGATTTTAAAAGATCTTGTGCATGAAGCAGTTGTTGGTGTGGAATTTT
CCACTTGTGAAATGCAAGAGTTCAAAAGACTTCTGGTTTGGGAGCGTAAT
GGGTTTGGGGTTTTAGGATGTACGATTGCTAATTTGGGTTAATGAGATAC
GATTTTCTAGATGGCCTGCGATACATTGAGGTCACAGCGTTTAATTGCTC
AGATTCACTTTTCTCTCCACCTTCCCTTTCTTCCTGTCCTTCTCATGGNC
CAATCCCAAAGCAGTAAGCCTACCACTCACAAGGACCAGTGAATGAGTGA
GTGTACAGCCGAGTTCATCAATGACCCACCTTGGACTTAGAAACACAAAG
GTACAGAAAGGGTGTGACCCACGGCAAGAGTGCCAAAACAATGGCTTCTG
ATGGTGACATGGGATAGCTTAAAATTTGTTAAAAGAACATGGGTCTCTTC
AAAGTACTGATTCAAAGGGTTTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGGCACTAATGCAAGAGTGATTAAGAGTCTCT
GAATCTTCACCAGCATTTGGTGTGGTGACTTTTTCATTTCCATTACCCTG
ATAGATGTGAAATTTCACAGTTGCTATAATTTTCACCTCCCCAGTGGTGT
TGAGCAGTTTTATGTACTAATTAAACACTAACTTATGTTTTCCAGAGAAA
TGTCTATTCATGAGCCTGTGTCTACTTCACAACTACATGCTTTTCAATGC
TGAGTTTTGAGAGATTTTATCCCATATTTCAATCCATTGTTACATGTATG
ATTTTAAAATACTTTAGTCCCATCTCTAGTTACTGTTTGTAATCATAAGA
GTTGTTTTTCAGAGCAATAGATCTTAATATTGGCAGACAATTTATCAGTT
CTTTTTATTGATTCTTGGTTTCATCTCTAAATACTCTTTGACTGGTGATA
GATTGTGGGGATTTTTTTCTACTTTTCTCCAGAAAATTTTTCTGTTTTAT
ATTTTAAATCCAAGTAAATCATTTCAGAAAGTTCTCTGTGTGCTGTGGTG
TGGGAATGGTGTCTGTGTGTCTCGGNATATGTGAATGTGTGTGCATGAGT
GCACATGAATAGTCCGGAGTATGATGGCTGGTGTCTTTCACAACGTTCTC
TGCCTTATTCCCTTGAAAAAGTCTCTCCCTGAGAAAAAAACTGCTTTTTC
TTCGGGTTGCTCTGCAAAAAGTCTTATAATCTG

Query= MSMg01no513_m14.b1 MSMg01no513_m14.b1 CHROMAT_FILE:
MSMg01no513_m14.b1 PHD_FILE: MSMg01no513_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:25 2005
         (575 letters)



>mm_chr6_96395922_96396891
          Length = 970

 Score = 1036 bits (536), Expect = 0.0
 Identities = 560/571 (98%), Gaps = 5/571 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaggctctgttcctctgtaggcaagttacgaagatttatgagcatggcagccg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||
Sbjct: 770 gaattctcaggctctgttcctctgtaggcaagttacgaagatttatga-----gcagccg 716

                                                                       
Query: 65  ggctggtgccgagaaactgaagcgctgagaccagagtagtcttttctttttcttttttac 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 715 ggctggtgccgagaaactgaagcgctgagaccagagtagtcttttttttttcttttttac 656

                                                                       
Query: 125 attttggaatgctttttaaatttgatgatattcgcatgtacataatgagatcccttgtga 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 655 attttggaatgctttttaaattcgatgatattcgcatgtacataatgagatcccttgtga 596

                                                                       
Query: 185 ggatggaagccaagtcaaagggaaaacacatttatgtttcatatgtaccagatacacata 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ggatgggagccaagtcaaagggaaaacacatttatgtttcatatgtaccagatacacata 536

                                                                       
Query: 245 gctcaaagctaattttaaataagattttaaaagatcttgtgcatgaagcagttgttggtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gctcaaagctaattttaaataagattttaaaagatcttgtgcatgaagcagttgttggtg 476

                                                                       
Query: 305 tggaattttccacttgtgaaatgcaagagttcaaaagacttctggtttgggagcgtaatg 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 475 tggaattttccacttgtgaaatgcaagagttcaaaagacttctggtttgggagcataatg 416

                                                                       
Query: 365 ggtttggggttttaggatgtacgattgctaatttgggttaatgagatacgattttctaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ggtttggggttttaggatgtacgattgctaatttgggttaatgagatacgattttctaga 356

                                                                       
Query: 425 tggcctgcgatacattgaggtcacagcgtttaattgctcagattcacttttctctccacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tggcctgcgatacattgaggtcacagcgtttaattgctcagattcacttttctctccacc 296

                                                                       
Query: 485 ttccctttcttcctgtccttctcatggnccaatcccaaagcagtaagcctaccactcaca 544
           ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 295 ttccctttcttcctgtccttctcatggtccaataccaaagcagtaagcctaccactcaca 236

                                          
Query: 545 aggaccagtgaatgagtgagtgtacagccga 575
           |||||||||||||||||||||||||||||||
Sbjct: 235 aggaccagtgaatgagtgagtgtacagccga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 970
Length adjustment: 10
Effective length of query: 565
Effective length of database: 960
Effective search space:   542400
Effective search space used:   542400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)