XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTAT
TGACAAGCTTCTCAGACTAAAACAAAGTCAAAAGGATGCACTGTTCTCTC
CAGAGGACAAAGTTTGATGTCAACAAAGCTGAGCCGCCATTGCTGCTGCC
TTCAGAGCTTTCACTCCCGTTCTCTGGAGTAGAGGAAGAGAATGACCCTT
GAATGTATTTTTGCCTATTGAAGAAAAAAAATAAAAAAGAAAAGAAATTC
TCTTTATTTCACATACTTCCATCTTATTCCCCAAAGGTCTATATCTGGTT
AGTGAGCCAAATTTAACTAATCTTTTCACACAAATCCATAATACTAAATC
TATCTGCACACAAAACATTTGAAATTTCTTTCATAATTCCTTGTTCTTTA
TCTCACAAAACGTATGGCCTCTGTCCATAAATTATTAATTACAAGCTTAT
TTAAACCACAGATCTGATACTGATCCTAAAATGGGAAATCATACTACCTG
ATTTTTTTTGTATTCTACTAATCATTTTTCTGTTGTTGTAATAAAATGTT
GTTGCCAAATGCAAGTTACAGAAGGAAGAGTTTACTTTGGTTTTGATTTC
AGCAAGCAAGTTCCTAATGGTGAAGAAGGCATGGAAGCAAGCAACTAGAG
CAGGAAGCCCTACTTTAAAGTAGAAGCACACATCTCTACTGTGCACATGA
CACAGAGGTCAGAAAGAAGTGGAAGAAGTCGACAAACCCTCTATGCCACA
TCAAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGTTGATCTCTGAACTCCATCTTTAATTGGGT
TATTTGGGTTAGTTGAGACTAGTAATGGTGCAGGAAATAGAACTTAAAGT
GACTACCATGTGTAGCTGAGCAGGACTCCCAGGGGAGAAATAAGAAAACA
AAACAAAACAAACAAACAAACAAAAACACACACACAAAATCTTTGACTCA
ACCTGTGTCCTACCCACTTGCTATGCAGGGATAGTGATAGATCAAAGACT
GAGGAAATGGACGCTTATTGGCTCAAATTCCGACCCATCCTGTGGGCAAG
AACTAATCCCTGACACTAAGCTTGAAAACAGGAGCCTAAAATAATTTCCC
TCTAAGTGACTTTACCTGGAAGCCAATGGAAATAGTGCAGAGACAAACAG
CCAAACATTAGCTACAGCTCTGGAGAATTCTTGTGGAAGAGTTTGGAGAA
GGATTAAGGAACCTGAAGAGGATAGGGAGTCCATGGGTAGAACAATAGTG
TACACTAATCTAGAACCTTGTGGGATCCCAGAGCTGATCCACCAACCAAA
GAGTGAACATGGACTGGACTTAGTGCTTCTGTAGCAGATGTGGGCTTGGT
CTTCTTACCCATCCCCCAACAACTGGGTCAGACTTGTACCTGAACCTGTT
GCTTGCCTGTGGATTCCATGCCACTAACTTGGCCACTTGTCTTGCCTCAG
TGAGAGGATGTAC

Query= MSMg01no513_o15.b1 MSMg01no513_o15.b1 CHROMAT_FILE:
MSMg01no513_o15.b1 PHD_FILE: MSMg01no513_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:36 2005
         (701 letters)



>mm_chr6_75853779_75854879
          Length = 1101

 Score = 1222 bits (632), Expect = 0.0
 Identities = 654/662 (98%), Gaps = 2/662 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttctcagactaaaacaaagtcaaaaggatgcactgttctctccagaggacaaagttt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 660 agcttctcagactaaaacaaagtcaaaaggatgcactgttctctcccgaggacaaagttt 601

                                                                       
Query: 61  gatgtcaacaaagctgagccgccattgctgctgccttcagagctttcactcccgttctct 120
           ||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gatgtcaacaaaggtgggccaccattgctgctgccttcagagctttcactcccgttctct 541

                                                                       
Query: 121 ggagtagaggaagagaatgacccttgaatgtatttttgcctattgaagaaaaaaaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggagtagaggaagagaatgacccttgaatgtatttttgcctattgaagaaaaaaaataaa 481

                                                                       
Query: 181 aaagaaaagaaattctctttatttcacatacttccatcttattccccaaaggtctatatc 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 480 aaagaaaagaaattctctttatttcacatacttctatcttattccccaaaggtctatatc 421

                                                                       
Query: 241 tggttagtgagccaaatttaactaatcttttcacacaaatccataatactaaatctatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tggttagtgagccaaatttaactaatcttttcacacaaatccataatactaaatctatct 361

                                                                       
Query: 301 gcacacaaaacatttgaaatttctttcataattccttgttctttatctcacaaaacgtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gcacacaaaacatttgaaatttctttcataattccttgttctttatctcacaaaacgtat 301

                                                                       
Query: 361 ggcctctgtccataaattattaattacaagcttatttaaaccacagatctgatactgatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggcctctgtccataaattattaattacaagcttatttaaaccacagatctgatactgatc 241

                                                                       
Query: 421 ctaaaatgggaaatcatactacctgattttttttgtattctactaatcatttttctgttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctaaaatgggaaatcatactacctgattttttttgtattctactaatcatttttctgttg 181

                                                                       
Query: 481 ttgtaataaaatgttgttgccaaatgcaagttacagaaggaagagtttactttggttttg 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 180 ttgtaataaaatgttgttgccaaatgcaagttacagaaggaagagtttactttgtttttg 121

                                                                       
Query: 541 atttcagcaagcaagttcctaatggtgaagaaggcatggaagcaagcaactagagcagga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atttcagcaagcaagttcctaatggtgaagaaggcatggaagcaagcaactagagcagga 61

                                                                       
Query: 601 agccctactttaaagtagaagcacacatctctactgtgcacatgacacagaggtcagaaa 660
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 60  agccctactttaaagtagaagcacacatctctactgtgcacatg--acagaggtcagaaa 3

             
Query: 661 ga 662
           ||
Sbjct: 2   ga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)