BAC Information

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BAC

Clone NameMSMg01-514F20
Chromosome6 (Build37)
Map Location 28,933,298 - 29,091,014
singlet/doubletdoublet
Overlap geneLep, Rbm28
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367
Downstream geneD330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514F20.T7 (MSMg01no514_f20.b1)MSMg01-514F20.TJ (MSMg01no514_f20.g1)
ACCAG586867AG586868
length769766
length of high quality
(start - end)		641 (36 - 676)634 (66 - 699)
definitionCHROMAT_FILE: MSMg01no514_f20.b1 PHD_FILE: MSMg01no514_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:14 2005CHROMAT_FILE: MSMg01no514_f20.g1 PHD_FILE: MSMg01no514_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,090,382 - 29,091,014)(28,933,298 - 28,933,930)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTCA
TATATGAATACCATGTCTCCCAGAGCTAGGATATTATCTTCTGCCGCATA
CTGAAATGAATGCAGGCAGATTAATCTAAAGCATAGATTAATATAGTAGG
CTAACTCAGGAGTCACCATCTAGAGAGATCTTTTCTAAGTCCCCAACACA
GGGCCAAGTGTTCCTACTTCTGTGTCCCCAACCTCCCATCTGTTATTCAC
ATACTAACCAGGTAGCATCTTCCACAAATATGAAAGACTTAAGGAATCTG
AACCACCTACGACAGCACAGACCACTAACAGAGATAGTCAGAAGAAGAAA
CACACACAGTTCAGCCTTGGAACCCATGGACTACACATCAGTGGAGTCAA
CCACACACAAAGCAAAAGCACTTGGGGAGAAAGTGGTCCATATTGAACTT
GTATGGCCTTTCCATTCTCTATGAACAATGTAACTATTTTATGTTTCATA
GGGGTGTGTGTATGATGACACATTTTAATGAAAAAGTCTCTTGCCCCCAA
GGAGATTGAATTTTTTCCAGGCCTTGCCATCAAGTTAACAATATGCCTTG
AGATCATTTAGAACCATGTACTTAGCCATTTATCCTACTGTATACTCAGC
CTCTTTAAGCTTAACTGCTTTAAAGAGAACATGTCACAAACCTAACTGTG
CCTTGAATTTCCCAGTCAGGTTTTGCAACCTAAGCTAAATGCATAGCTTT
TATATTAAGTTATGTACTT

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGATAAAGCAACTGCCTGCAGCTTGCTCCATTCC
TGCATCCCATGACCAGCAAGGCACTGGGATGTTGTCCCAAACACACTGCA
GTCCTCCCTCTTCTTAATCTCATCATCACCATCCCAGCTCCTCCAGGAAG
AGCTGAGAGGGCCCGTGGGACATCCCAGTTGGCTCAGGGACTAGCAGGAG
AAAAGCAGGGAAAGGCACCCCTTCTAGCTTCAGAGACAGGCAGAGCCCCC
TCTGCTTGGAAGCCTGAGCTCCAGTTAGTTCTTTTCATTAAATATTCTCT
CTGGGCAGGAAAGATTAGGCCAACATTGTCAGGTCTGACTCGGGGCAGAT
CCAGGTGCTGCCTTTGTACTGCCAAGGTCAGCAGAATGGAATGAGATCTA
GGCTTGGGGAGATGGTCACCCCTCTGCAGAAGCTCTGGGGCCTGGAGTGC
CCGGTCACACACACTGTCAGCAGGAAATGGCCTTTCCTCTGAAATGGCCA
TTGTTCTGTTTGCTGCTGAGCTACCAGGGAGAGGCAAAGAAAAGGCTCCC
TGGCTGGGGACAAGGAAAAGGGTGATGACCATCCTAGCCCAGTGGCTCTT
TTCACAGCTCAACTCCTATAAAGTCCTCAGTGTCCCGCTGGCTTCCATAA
GGTACAAGGAAATGACTGTCCCCCAAAAATCAGTTCATTTCATGGCAGAA
GAGACATCCCTGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_f20.b1 MSMg01no514_f20.b1 CHROMAT_FILE:
MSMg01no514_f20.b1 PHD_FILE: MSMg01no514_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:14 2005
         (641 letters)



>mm_chr6_29090344_29091380
          Length = 1037

 Score = 1181 bits (611), Expect = 0.0
 Identities = 629/637 (98%), Gaps = 4/637 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctcatatatgaataccatgtctcccagagctaggatattatcttctgccgcat 64
           ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 671 gaattctctcatataagactaccatatctcccagagctaggatattatcttctgccgcat 612

                                                                       
Query: 65  actgaaatgaatgcaggcagattaatctaaagcatagattaatatagtaggctaactcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 actgaaatgaatgcaggcagattaatctaaagcatagattaatatagtaggctaactcag 552

                                                                       
Query: 125 gagtcaccatctagagagatcttttctaagtccccaacacagggccaagtgttcctactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gagtcaccatctagagagatcttttctaagtccccaacacagggccaagtgttcctactt 492

                                                                       
Query: 185 ctgtgtccccaacctcccatctgttattcacatactaaccaggtagcatcttccacaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctgtgtccccaacctcccatctgttattcacatactaaccaggtagcatcttccacaaat 432

                                                                       
Query: 245 atgaaagacttaaggaatctgaaccacctacgacagcacagaccactaacagagatagtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 431 atgaaagacttaaggaatctgaaccacctacgacagcacagaccactaacagagat---- 376

                                                                       
Query: 305 agaagaagaaacacacacagttcagccttggaacccatggactacacatcagtggagtca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agaagaagaaacacacacagttcagccttggaacccatggactacacatcagtggagtca 316

                                                                       
Query: 365 accacacacaaagcaaaagcacttggggagaaagtggtccatattgaacttgtatggcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 accacacacaaagcaaaagcacttggggagaaagtggtccatattgaacttgtatggcct 256

                                                                       
Query: 425 ttccattctctatgaacaatgtaactattttatgtttcataggggtgtgtgtatgatgac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttccattctctatgaacaatgtaactattttatgtttcataggggtgtgtgtatgatgac 196

                                                                       
Query: 485 acattttaatgaaaaagtctcttgcccccaaggagattgaattttttccaggccttgcca 544
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 195 acattttaatgaaaaagtctcttgcccccaaggagactgaattttttccaggccttgcca 136

                                                                       
Query: 545 tcaagttaacaatatgccttgagatcatttagaaccatgtacttagccatttatcctact 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tcaagttaacaatatgccttgagatcatttagaaccatgtacttagccatttatcctact 76

                                                
Query: 605 gtatactcagcctctttaagcttaactgctttaaaga 641
           |||||||||||||||||||||||||||||||||||||
Sbjct: 75  gtatactcagcctctttaagcttaactgctttaaaga 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1037
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1027
Effective search space:   648037
Effective search space used:   648037
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no514_f20.g1 MSMg01no514_f20.g1 CHROMAT_FILE:
MSMg01no514_f20.g1 PHD_FILE: MSMg01no514_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:14 2005
         (634 letters)



>mm_chr6_28933098_28934130
          Length = 1033

 Score = 1195 bits (618), Expect = 0.0
 Identities = 630/634 (99%), Gaps = 1/634 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagataaagcaactgcctgcagcttgctccattcctgcatcccatgaccagcaaggcact 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 cagataaagcaactgcctgcagcttgctccattcctgcatcc-atgaccagcaaggcact 259

                                                                       
Query: 61  gggatgttgtcccaaacacactgcagtcctccctcttcttaatctcatcatcaccatccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gggatgttgtcccaaacacactgcagtcctccctcttcttaatctcatcatcaccatccc 319

                                                                       
Query: 121 agctcctccaggaagagctgagagggcccgtgggacatcccagttggctcagggactagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agctcctccaggaagagctgagagggcccgtgggacatcccagttggctcagggactagc 379

                                                                       
Query: 181 aggagaaaagcagggaaaggcaccccttctagcttcagagacaggcagagccccctctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggagaaaagcagggaaaggcaccccttctagcttcagagacaggcagagccccctctgc 439

                                                                       
Query: 241 ttggaagcctgagctccagttagttcttttcattaaatattctctctgggcaggaaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttggaagcctgagctccagttagttcttttcattaaatattctctctgggcaggaaagat 499

                                                                       
Query: 301 taggccaacattgtcaggtctgactcggggcagatccaggtgctgcctttgtactgccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taggccaacattgtcaggtctgactcggggcagatccaggtgctgcctttgtactgccaa 559

                                                                       
Query: 361 ggtcagcagaatggaatgagatctaggcttggggagatggtcacccctctgcagaagctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggtcagcagaatggaatgagatctaggcttggggagatggtcacccctctgcagaagctc 619

                                                                       
Query: 421 tggggcctggagtgcccggtcacacacactgtcagcaggaaatggcctttcctctgaaat 480
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 620 tggggcctggagtgcccgggcacacacactgacagcaggaaatggcctttcctctgaaat 679

                                                                       
Query: 481 ggccattgttctgtttgctgctgagctaccagggagaggcaaagaaaaggctccctggct 540
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 680 ggccattgttctgtttgctgctgagctatcagggagaggcaaagaaaaggctccctggct 739

                                                                       
Query: 541 ggggacaaggaaaagggtgatgaccatcctagcccagtggctcttttcacagctcaactc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggggacaaggaaaagggtgatgaccatcctagcccagtggctcttttcacagctcaactc 799

                                             
Query: 601 ctataaagtcctcagtgtcccgctggcttccata 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 800 ctataaagtcctcagtgtcccgctggcttccata 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1033
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1023
Effective search space:   638352
Effective search space used:   638352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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