BAC Information

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BAC

Clone NameMSMg01-514G12
Chromosome6 (Build37)
Map Location 86,885,034 - 87,036,224
singlet/doubletdoublet
Overlap geneAak1, LOC100043555, Nfu1, Gfpt1
Upstream geneLOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik
Downstream geneD6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514G12.T7 (MSMg01no514_g12.b1)MSMg01-514G12.TJ (MSMg01no514_g12.g1)
ACCAG586899AG586900
length734745
length of high quality
(start - end)		684 (44 - 727)601 (73 - 673)
definitionCHROMAT_FILE: MSMg01no514_g12.b1 PHD_FILE: MSMg01no514_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:17 2005CHROMAT_FILE: MSMg01no514_g12.g1 PHD_FILE: MSMg01no514_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,885,034 - 86,885,713)(87,035,652 - 87,036,224)
sequence
ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTTTGTCCCCATAAACAGGAAAAACATGAATTTCTTTTCTTTTTC
TTTATTAAAAATTTACCTGTTTATGTAGTTGTTGTGGTTTTCCTCCTCTA
TAGTATTTCTGGATGTTATAGGGTCTGTGCTTCTGGTTTGGGTGGAGCAC
GGAGACAGTGAGCAGGTGGGTGTTTCATGTGGTTCATTCTCTCCTGGGTC
AGGAGAATTGGGGATTCAGCAGGACGGTGGAGTTGCTATTGGAGATCCCA
CGAGGTTTCTCAAAGACCACTGGAAACTCACTGCCCCTTTCCCATGCTGT
TGGTGTTGTCTGTGTTACTGGAACAACTGCTAATTCTGCCCCTAGTGTGT
CTGTAACTGACATGTACTTCTCCACTCTTGTTCACAGAGAGACCTATCAG
GGCACAAGAACATTGTGGGCTACATTGATTCTAGTATCAACAATGTGAGC
AGCGGCGACGTCTGGGAAGTTCTCATTCTCATGGACTTCTGCAGAGGTGT
GTGCTGATCCTCCTGAAGCTCTTGCTGCTGGCAGTTTAATGGTCGAGGAC
ATGGGGAGCATGTCACATACTGTCCGTTGCACTCTGAAGAAAATGCTCCG
CTTTCACAGATGGGAAAGCAAACGCAGGCCATGCTGCTCTTAGTTATGAT
CATGACTACTAGGGCTATGGTACAGGTCCAATGG

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACTTTTAAGAAACACTTTTAAGAAAAG
GTGGTGGTGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAG
ATTTCTGAGTTCGAGGTCAGCCTGGTCTAAATAGTGAGTTCCAGGACAGC
CAGGGCTACACAGAAAAACCCTGTCTCAGAAAAAAAAAGAAAAAAGAAAG
AAGAAAACACTGCACAAAGCATCTGAGATAGTTAGGTCTCCCAAGATGTA
GTAGAGGCCTAGTGGTCTGGGTTGAATCTGTAAGAAGATTCTTAAGGCTT
CAGCCTACCAAATGCAGAGCCCGCTGCTCTGCAAACATTCATCTACTTGC
CTTATTTTCATTTCAATTTCTTATCTAATGAACCTTGGTCTGTTGCTCGT
ATCTTAAATTGCTAAGCCCAAGTTATCATGGAGACATTCTTCTGGGCCTT
CACTTTTGAGTTGAGTCCTATGGCTCGTTCTCAGGTAAATAAACCACAGC
AAACACACACAATTCAATTTACGCAGTCTACAAACACGTGGGGAGTTAGT
AGGATGCTTCCACAGGTAAGATGCACACAACCAACGCACACCACCAAGCC
TGACTATCCAAGTTCAATGCTCAGGATTCAAACAGTGGAAGGAGAAAACT
GACTCCCGTTTAAGTTGTTCACTGATTTCCACACATGCGCTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_g12.b1 MSMg01no514_g12.b1 CHROMAT_FILE:
MSMg01no514_g12.b1 PHD_FILE: MSMg01no514_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:17 2005
         (684 letters)



>mm_chr6_86884830_86885913
          Length = 1084

 Score = 1307 bits (676), Expect = 0.0
 Identities = 679/680 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttttgtccccataaacaggaaaaacatgaatttcttttctttttctttatta 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttttggccccataaacaggaaaaacatgaatttcttttctttttctttatta 264

                                                                       
Query: 65  aaaatttacctgtttatgtagttgttgtggttttcctcctctatagtatttctggatgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaatttacctgtttatgtagttgttgtggttttcctcctctatagtatttctggatgtt 324

                                                                       
Query: 125 atagggtctgtgcttctggtttgggtggagcacggagacagtgagcaggtgggtgtttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagggtctgtgcttctggtttgggtggagcacggagacagtgagcaggtgggtgtttca 384

                                                                       
Query: 185 tgtggttcattctctcctgggtcaggagaattggggattcagcaggacggtggagttgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtggttcattctctcctgggtcaggagaattggggattcagcaggacggtggagttgct 444

                                                                       
Query: 245 attggagatcccacgaggtttctcaaagaccactggaaactcactgcccctttcccatgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attggagatcccacgaggtttctcaaagaccactggaaactcactgcccctttcccatgc 504

                                                                       
Query: 305 tgttggtgttgtctgtgttactggaacaactgctaattctgcccctagtgtgtctgtaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgttggtgttgtctgtgttactggaacaactgctaattctgcccctagtgtgtctgtaac 564

                                                                       
Query: 365 tgacatgtacttctccactcttgttcacagagagacctatcagggcacaagaacattgtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgacatgtacttctccactcttgttcacagagagacctatcagggcacaagaacattgtg 624

                                                                       
Query: 425 ggctacattgattctagtatcaacaatgtgagcagcggcgacgtctgggaagttctcatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggctacattgattctagtatcaacaatgtgagcagcggcgacgtctgggaagttctcatt 684

                                                                       
Query: 485 ctcatggacttctgcagaggtgtgtgctgatcctcctgaagctcttgctgctggcagttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctcatggacttctgcagaggtgtgtgctgatcctcctgaagctcttgctgctggcagttt 744

                                                                       
Query: 545 aatggtcgaggacatggggagcatgtcacatactgtccgttgcactctgaagaaaatgct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aatggtcgaggacatggggagcatgtcacatactgtccgttgcactctgaagaaaatgct 804

                                                                       
Query: 605 ccgctttcacagatgggaaagcaaacgcaggccatgctgctcttagttatgatcatgact 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ccgctttcacagatgggaaagcaaacgcaggccatgctgctcttagttatgatcatgact 864

                               
Query: 665 actagggctatggtacaggt 684
           ||||||||||||||||||||
Sbjct: 865 actagggctatggtacaggt 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no514_g12.g1 MSMg01no514_g12.g1 CHROMAT_FILE:
MSMg01no514_g12.g1 PHD_FILE: MSMg01no514_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:17 2005
         (601 letters)



>mm_chr6_87035264_87036264
          Length = 1001

 Score =  977 bits (505), Expect = 0.0
 Identities = 556/577 (96%), Gaps = 8/577 (1%)
 Strand = Plus / Minus

                                                                       
Query: 29  gtggtggtgcacgcctttaatcccagcactcaggaggcagaggcaggcagatttctgagt 88
           ||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||
Sbjct: 961 gtggtggtgcacgcctttaatcccagcactcgggaggcagaggcaggtggatttctgagt 902

                                                                       
Query: 89  tcgaggtcagcctggtctaaatagtgagttccaggacagccagggctacacagaaaaacc 148
           ||||||||||||||||||| |    ||||||||||||||||||| ||||||||| |||||
Sbjct: 901 tcgaggtcagcctggtctaca----gagttccaggacagccaggactacacagagaaacc 846

                                                                       
Query: 149 ctgtctcag----aaaaaaaaagaaaaaagaaagaagaaaacactgcacaaagcatctga 204
           |||||||||    |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 845 ctgtctcagaaaaaaaaaaaaagaaaaaagaaaaaagaaaacactgcacaaagcatctga 786

                                                                       
Query: 205 gatagttaggtctcccaagatgtagtagaggcctagtggtctgggttgaatctgtaagaa 264
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 785 gatggttaggtctcccaagatgtagtagaggcctactggtctgggttgaatctgtaagaa 726

                                                                       
Query: 265 gattcttaaggcttcagcctaccaaatgcagagcccgctgctctgcaaacattcatctac 324
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 725 gattcttaaggcttcagcctaccaaacgcagagcccgctgctctgcaaacattcatctac 666

                                                                       
Query: 325 ttgccttattttcatttcaatttcttatctaatgaaccttggtctgttgctcgtatctta 384
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 665 ttgccttattttcatttcaatttcttatctaatgaaccttggtctgttgcacgtatcttg 606

                                                                       
Query: 385 aattgctaagcccaagttatcatggagacattcttctgggccttcacttttgagttgagt 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aattgctaagcccaagttatcatggagacattcttctgggccttcacttttgagttgagt 546

                                                                       
Query: 445 cctatggctcgttctcaggtaaataaaccacagcaaacacacacaattcaatttacgcag 504
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cctatggctcattctcaggtaaataaaccacagcaaacacacacaattcaatttacgcag 486

                                                                       
Query: 505 tctacaaacacgtggggagttagtaggatgcttccacaggtaagatgcacacaaccaacg 564
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tctacaaacacgtggggagttagtaggatgcttccacaggtaagatgcacacaaccaacg 426

                                                
Query: 565 cacaccaccaagcctgactatccaagttcaatgctca 601
           |||||||||||||||||||||||||||||||||||||
Sbjct: 425 cacaccaccaagcctgactatccaagttcaatgctca 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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