Query= MSMg01no514_h21.b1 MSMg01no514_h21.b1 CHROMAT_FILE:
MSMg01no514_h21.b1 PHD_FILE: MSMg01no514_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:25 2005
(556 letters)
>mm_chr6_119163361_119164315
Length = 955
Score = 1004 bits (519), Expect = 0.0
Identities = 544/553 (98%), Gaps = 3/553 (0%)
Strand = Plus / Minus
Query: 5 gaatt-aaaacctgatttacatttgtcagtcattttatatattttggctcatgctcattt 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gaattcaaaacctgatttacatttgtcagtcattttatatattttggctcatgctcattt 696
Query: 64 ttggaacttgtttaactcaattccttgaaaaatacctctttacttaggaataactttgat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttggaacttgtttaactcaattccttgaaaaatacctctttacttaggaataactttgat 636
Query: 124 gaaagaacagatcagggccctgctaatcagcaaattttgtctctgctgcactgttctgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaaagaacagatcagggccctgctaatcagcaaattttgtctctgctgcactgttctgaa 576
Query: 184 tagcacacagcacacataccaccacaggcctgtggggcttagactaccccctggcccagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tagcacacagcacacataccaccacaggcctgtggggcttagactaccccctggcccagc 516
Query: 244 tctaacccagaacgggccctggaagctgcatgcagtgcctggcattgcccctggaacaga 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gctaacccagaacgggccctggaagctgcatgcagtgcctggcattgcccctggaacaga 456
Query: 304 gcagtgctcaaaactgttacattgtattgtgctgccttgatggctcctcctccagtggcc 363
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gcattgctcaaaactgttacattgtattgtgctgccttgatggctcctcctccagtggcc 396
Query: 364 tgggaagtcacccatcctagaagaacacagacccaatggcttatgattctgtgtctgctg 423
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 395 tgggaagtcacccatcctagaagaacacagacccaatggcttatgattc--tgtctgctg 338
Query: 424 acacttgtcatgagccatgagcacagcacgtggtaagtaggacagtaccaggaagagtgt 483
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 337 acacttgtcatgagccatgagcacagcacatggtaagtgggacagtaccaggaggagtgt 278
Query: 484 cagtctacacagtacgaatgaacagtgcagcaagaccctgcctttctccactgaccttca 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cagtttacacagtacgaatgaacagtgcagcaagaccctgcctttctccactgaccttca 218
Query: 544 gtgtccttcagca 556
|||||||||||||
Sbjct: 217 gtgtccttcagca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space: 515970
Effective search space used: 515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_h21.g1 MSMg01no514_h21.g1 CHROMAT_FILE:
MSMg01no514_h21.g1 PHD_FILE: MSMg01no514_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:25 2005
(533 letters)
>mm_chr6_119021731_119022663
Length = 933
Score = 971 bits (502), Expect = 0.0
Identities = 526/534 (98%), Gaps = 1/534 (0%)
Strand = Plus / Plus
Query: 1 cacgtccaagttgctatcctgattatccaaatggacctgatgtaactacctagatcttta 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cacgtccaagttgctgtcctgattatccaaatggacctgatgtaactacctagatcttta 259
Query: 61 ccaggagtcaggagaacagggaacagatgctacagtgctagcctggcagaaagcggagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 260 ccaggagtcaggagaacagggaacagatgctacagtgctagcctggcagaaagtggagga 319
Query: 121 gctcgttctagatgttagagaaggtggaaaacaaactcactccctacagcatcccaaggg 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gctcgttctagatgctagagaaggtggaaaacaaactcactccctacagcatcccaaggg 379
Query: 181 acctcaaatctgcccttacctgccctccaggagtgaatggtaatacatcgttgttattag 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 380 acctcaaatctgcccttacctgccctccaggagtgaatgataatacatcgttgttattag 439
Query: 241 ttaagtctgccctgatttgttacaacagaaatggggaaaaaaaa-gatacaccctgctct 299
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 440 ttaagtctgccctgatttgttacaacagaaatgggaaaaaaaaaagatacaccctgctct 499
Query: 300 tctctgtgtaaaatctctaaaatgaaaatcagcagggcaggtggagtcttgtttccaaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctctgtgtaaaatctctaaaatgaaaatcagcagggcaggtggagtcttgtttccaaga 559
Query: 360 ggtgcttgtttttcggccagagcaaatgagtaccttaaactttggtttcaaacaggaagc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggtgcttgtttttcggccagagcaaatgagtaccttaaactttggtttcaaacaggaagc 619
Query: 420 cctcactctccatttctgccggggctgagctggaccagccaaccttgcagtgaacaatcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cctcactctccatttctgccggggctgagctggaccagccaaccttgcagtgaacaatcc 679
Query: 480 ctagagtctgagaaatgcggtccagaaagaagtgtctcccgctattggtttaga 533
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 680 ctagagtccgagaaatgcggtccagaaagaagtgtctcccgctatcggtttaga 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
