BAC Information

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BAC

Clone NameMSMg01-514I22
Chromosome6 (Build37)
Map Location 42,749,791 - 42,750,453
singlet/doubletsinglet
Overlap genenone
Upstream genePip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452
Downstream geneOlfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514I22.T7 (MSMg01no514_i22.b1)MSMg01-514I22.TJ (MSMg01no514_i22.g1)
ACCAG587013AG587014
length765766
length of high quality
(start - end)		667 (35 - 701)630 (66 - 695)
definitionCHROMAT_FILE: MSMg01no514_i22.b1 PHD_FILE: MSMg01no514_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:30 2005CHROMAT_FILE: MSMg01no514_i22.g1 PHD_FILE: MSMg01no514_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCAGC
TATAAAGATGTCATGTTCAATTTTTCTTTCTGTCTACTCAGGGACTTTTA
GTTTCAATTTAGAAAATAGAAAGTGCAAATAGATTTTTGAGTTTCAAGGA
AATGTCAAAAACTCCATTTCAGAGTCTGTAAAGTTTTAAAAGTAAAACCT
ATGTGACCATGTTTCATCTTTAAAATCTTCGCATGATTGTCTCTGCAGCT
TAGAATACAGGAAGGAGTGATCCCCAGCTTTATGTTCTTCTTCCCAGAGA
GTATCAAAGAAGGGGTCTTCACACTATCTGTGAAGACACAAGTCAAATTC
AAAGATGCATTAGCTAGATTCTCTCCTAAGCATAATAACCAATACCAATA
CAGATATTATCTACAACTATGAGACCAAGGAAATCTGGCAGTGTTTTCTC
CCTGACTGTGTTTATGTTTCCTTACTAAGAGGCAGGGCTCAGAGGCTAAC
TAGGAAGAGATGGACAATAACTCAACTGAATTAGCTTATTGATATAACTG
TTGATTATATCTGCCTCTTAATCCTCCCTTTCTTCTTTCTCTCTCTTCAT
CACTTTTCTCTCTGTCTGTCTCTGTCTCTCTCTCTCTCTCTCACACACAC
ACACACACACACACATACACACACTAGTAGTTATGTATAACTATCACACA
GTAATGCTTAGTCAGGCTTAATTTATTCACAGATTAAGGGTTCATATGCA
AAAACCCATGGACAN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGGATGTTTTGAGTTATGATCTTTTTGCATTTTG
CCTTTTCTTTGATTGTTGTGCTGATATTCTCTATGGAATCTTCTGCACCT
GAAATTCTCTCTTCCATCTCTTGTATTCTGTTGCTGATGCTTGCATCTGT
GGTTCCAGATTTCTTTCCTAGGATTTCTATCTCCAGCGTTGCCTCACTTT
GGGCTTTCTTTATTGTGTCTACTTCCCCTTTTAGGTCTAGTATGGTTTTT
TTATTTTCATCACCTGTTTGGATGTGCTTTTCTGTTTTTGTTTAAGGACT
TCTACCTGTTTGGTTGTGTTTTCCTGTTTTTCTTTAAGGACTTGTAACTC
TTTAGCAGTGTTCCACTGTATTTCTTTAAGTGAATTATTAAAGTCTTTCT
TGATGTCCTCTACCATCATCATGAGATATGCTTTTAAATCTGGGTCTAGG
TTTTAGGGTGTGTTGTGGTGCCCAGGAGTGGGTGAGGTGGGAATGCTGCT
TTCTGATGATGGTGAGTGGTCTAGGTTTCTGTTAGTAAGATTCTTATGTT
TGCCTTTTGCCATCTGGTAATCTCTGTAGTTAGTTGTTATAGTTGTCTCT
GGTTAGAGCTTGTTCCTCTCGTGATTCTGTTAGCCTCTATCAGCAGACCT
GGGATAGTAACTCTCTCCTGAGTTTCAGTGGTCTGAGCACTCTCTGCAGG
CAAGCTCTCCTCTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_i22.b1 MSMg01no514_i22.b1 CHROMAT_FILE:
MSMg01no514_i22.b1 PHD_FILE: MSMg01no514_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:30 2005
         (667 letters)



>mm_chr6_42749715_42750781
          Length = 1067

 Score = 1243 bits (643), Expect = 0.0
 Identities = 658/663 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccagctataaagatgtcatgttcaatttttctttctgtctactcagggacttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaattctccagctataaagatgtcatgttcaatttttctttctgtctactcagggacttt 680

                                                                       
Query: 65  tagtttcaatttagaaaatagaaagtgcaaatagatttttgagtttcaaggaaatgtcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tagtttcaatttagaaaatagaaagtgcaaatagatttttgagtttcaaggaaatgtcaa 620

                                                                       
Query: 125 aaactccatttcagagtctgtaaagttttaaaagtaaaacctatgtgaccatgtttcatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaactccatttcagagtctgtaaagttttaaaagtaaaacctatgtgaccatgtttcatc 560

                                                                       
Query: 185 tttaaaatcttcgcatgattgtctctgcagcttagaatacaggaaggagtgatccccagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttaaaatcttcgcatgattgtctctgcagcttagaatacaggaaggagtgatccccagc 500

                                                                       
Query: 245 tttatgttcttcttcccagagagtatcaaagaaggggtcttcacactatctgtgaagaca 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttatgttcttcttcccaaagagtatcaaagaaggggtcttcacactatctgtgaagaca 440

                                                                       
Query: 305 caagtcaaattcaaagatgcattagctagattctctcctaagcataataaccaataccaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caagtcaaattcaaagatgcattagctagattctctcctaagcataataaccaataccaa 380

                                                                       
Query: 365 tacagatattatctacaactatgagaccaaggaaatctggcagtgttttctccctgactg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tacagatattatctacaactatgagaccaaggaaatctggcagtgttttctccctgactg 320

                                                                       
Query: 425 tgtttatgtttccttactaagaggcagggctcagaggctaactaggaagagatggacaat 484
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgtttatgtttcctcactaagaggcagggctcagaggctaactaggaagagatggacaat 260

                                                                       
Query: 485 aactcaactgaattagcttattgatataactgttgattatatctgcctcttaatcctccc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aactcaactgaattagcttattgatataactgttgattatatctgcctcttaatcctccc 200

                                                                       
Query: 545 tttcttctttctctctcttcatcacttttctctctgtctgtctctgtctctctctctctc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 199 tttcttctttctctctcttcatcacttttctctctgtctgtctctgtctctgtctctctc 140

                                                                       
Query: 605 tctcacacacacacacacacacacacatacacacactagtagttatgtataactatcaca 664
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tctctctcacacacacacacacacacatacacacactagtagttatgtataactatcaca 80

              
Query: 665 cag 667
           |||
Sbjct: 79  cag 77


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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