BAC Information

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BAC

Clone NameMSMg01-514N08
Chromosome6 (Build37)
Map Location 128,950,930 - 128,951,545
singlet/doubletsinglet
Overlap geneBC064078
Upstream geneTspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715
Downstream geneClec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514N08.T7 (MSMg01no514_n08.b1)MSMg01-514N08.TJ (MSMg01no514_n08.g1)
ACCAG587222AG587223
length747751
length of high quality
(start - end)		639 (44 - 682)619 (74 - 692)
definitionCHROMAT_FILE: MSMg01no514_n08.b1 PHD_FILE: MSMg01no514_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:52 2005CHROMAT_FILE: MSMg01no514_n08.g1 PHD_FILE: MSMg01no514_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCAAACTATCAGAATGCTCTAGATACAACTTCTTGTTGATCTATAT
CTTATAAAAATTGCAAATTACCTTTGTATAACACGGAAAAGAAGGATTTA
TTTTTGTTTTTGTTTTTTTGTTTTTTGTTTGATTTTTGAATTAGAGCAAA
GTTGGCATATTTCATTTTAAGCTAATGTGGATAAGGAGTTTGATATTACA
CTTGAGACATTTTTATCCAAGGCAAGTTCACAGAGATTTTTCTTTTTACT
TTTCCTCAGATAGTTTTATAGCCCTATGCTTCATGTTTGAGTTGCCTTTT
ATAGGAGGAGGTGGGAGAGAGTGAGACAGAGTAGAGTGTGCACAGCAAGG
CCAGGGTCAACCTTCTGGGATAACTATAAGTTAGATCCACATGATGGACT
TACTTCTACAGTTACTTTATTATTTTTTGTATTTTTCTTTTATTATTATT
ATGGTTATCATTATTACTCTTAATTAGATTCATGTGTCTATGATTTCACG
AAAACCACATTTATGTCTTTGTTTCTGTCACTCTGATGTCGTGGTATCAC
TTCTGCAAATTTGGCCTCATTTTCTAAATTGTTCAGCTAGACTGATTCTA
TTCCCTTTTCATGCAATTTAAAATTTGCTTTGTGCTAGAGAGATGGCATG
TGGCTAAAAGCACTGACTACCCTTTTAGGGGACCTAGGTTTGGTTCN

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGAGGTTTGGTATCTGCCCGGCACGGG
AGCGCTTTGCCTGAGCATCAGCAGCAGACATCTCGGTTCTGGGACCCCGC
CGAGTGTATTCTGCACAGACAGCTAGCCATTTTCCTGGCCAGAGGATAGG
GATCTGCCCGGGTTGGGAGCAATTTGCCTGAGCATCAGCAGCAGACATCT
TGGTTCCGGGACCCTGCCGAGTGTACCCTGCACAGACATCTTAGTTCCAG
GACCCCGCCGAGTGTATCCTGCACAGCTGCAGAGAATACCATATGGCAAA
AGGCAAACTTAAGAATCCTACTAACAGAAATCAAGACCACTCACCATCAT
CAGAACGCAGCACTCCCATCCCACCTAGTCCTGGGCACCCCAACACAACC
AAAAAGCTAGACCCAGATTTAAAAACATATCTCATGATGATGGTAGAGGA
CATCAAGAAGAACTTTGATAACTCACTTAAAGAAATACAGGAGAACACTG
CTAAAGAGTTACAAGTCCTTAAAGAAAAGCAGGAAAACACAACCAAACAG
GTAGAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTGATGGA
AATGAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACAATANAGA
AAACCCCAAGTGAGGCAACGCTGGAGATAGAAACCCCATGAAAGAAAACT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_n08.b1 MSMg01no514_n08.b1 CHROMAT_FILE:
MSMg01no514_n08.b1 PHD_FILE: MSMg01no514_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:52 2005
         (639 letters)



>mm_chr6_128950722_128951761
          Length = 1040

 Score =  700 bits (362), Expect = 0.0
 Identities = 565/644 (87%), Gaps = 37/644 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaaactatcagaatgctctagatacaacttcttgttgatctatatcttataa 64
           ||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct: 209 gaattctccaaactatcagaatgctctagatacaacttcctgttgatctgtatcttacaa 268

                                                                       
Query: 65  aaattgcaaattacctttgtataacacggaaaagaaggatttatttttgtttttgttttt 124
           |||||||||||| |||||||| ||| ||||||| |||||||| |||||| ||||| ||||
Sbjct: 269 aaattgcaaattccctttgtagaactcggaaaaaaaggatttttttttg-ttttg-tttt 326

                                                                       
Query: 125 ttgttttttgtttgatttttgaattagagcaaagt-tggcatatttcattttaagctaat 183
           |||  ||||||||||||||||||||||||||| || | |||||||||||||||| |||||
Sbjct: 327 ttg--ttttgtttgatttttgaattagagcaacgtat-gcatatttcattttaatctaat 383

                                                                       
Query: 184 gtggataaggagtttgatattacacttgagacatttttatccaaggcaagttcacagaga 243
           ||||||||||| |||| ||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 384 gtggataaggattttgctattacagttgagacatttttattcaaggcaagttcacagaga 443

                                                                       
Query: 244 tttttctttttacttttcctcagatagttttatagccctatgcttcatgtttgagttgcc 303
           |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 tttttcttttcacttttcctcagatagttttagagccctatgcttcatgtttgagttgcc 503

                                                                       
Query: 304 ttttataggaggaggtgggagag-agtgagacagagtag-agtgtgcacagcaaggccag 361
           ||||||||||||||||||||||  ||||||||||||||  | ||||||||||| ||||||
Sbjct: 504 ttttataggaggaggtgggagatcagtgagacagagtacca-tgtgcacagcatggccag 562

                                                                       
Query: 362 ggtcaaccttctgggataactataagttagatcca--catgatggacttacttctacagt 419
           ||||| ||| ||||||||| ||||||||||  |||  |||  ||| ||| |||| |    
Sbjct: 563 ggtcagcctcctgggataattataagttaggcccagacat--tggccttgcttc-a---- 615

                                                                       
Query: 420 tactttattattttttgtatttttcttttattattattatggttatcattattactctta 479
              |||    |||||||||||||||||||||||||||   | |||| |||| || | |||
Sbjct: 616 ---ttt----ttttttgtatttttcttttattattat---gcttattattagtagtatta 665

                                                                       
Query: 480 attagattcatgt--gtctatgatttcacgaaaaccacat--ttatgtctttgtttctgt 535
           ||| | ||  |||  || ||||||||||| ||||| | ||  ||||||||||||||||||
Sbjct: 666 atttggtt--tgtatgtttatgatttcaccaaaac-a-atacttatgtctttgtttctgt 721

                                                                       
Query: 536 cactctgatgtcgtggtatcacttctgcaaatttggcctcattttctaaattgttcagct 595
           ||||||||| | ||||| |||||| | |||||||||||||||||| ||||||||||||||
Sbjct: 722 cactctgatttggtggtgtcacttgtacaaatttggcctcatttt-taaattgttcagct 780

                                                       
Query: 596 agactgattctattcccttttcatgcaatttaaaatttgctttg 639
           |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 781 agactgattctattcccttttcatgcaatttaaaatttactttg 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1040
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1030
Effective search space:   647870
Effective search space used:   647870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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