BAC Information

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BAC

Clone NameMSMg01-515A02
Chromosome6 (Build37)
Map Location 46,560,419 - 46,752,876
singlet/doubletdoublet
Overlap geneCntnap2
Upstream geneRbpsuh-rs3
Downstream geneLOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515A02.T7 (MSMg01no515_a02.b1)MSMg01-515A02.TJ (MSMg01no515_a02.g1)
ACCAG587352AG587353
length763768
length of high quality
(start - end)		645 (48 - 692)557 (80 - 636)
definitionCHROMAT_FILE: MSMg01no515_a02.b1 PHD_FILE: MSMg01no515_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:07 2005CHROMAT_FILE: MSMg01no515_a02.g1 PHD_FILE: MSMg01no515_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,560,419 - 46,561,060)(46,752,323 - 46,752,876)
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTTATAGATTCCTGTACAGGAATCTCTAAGGTTCCATTTTGC
TTTCTCAATGTAATTCCATACAAAACATAATTCCCCAAAAATTCCTATAT
GTTTGTTTTAGTCAGGGTTTCTCTTCCTGCACAAACATCATGACCAAGAA
GCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTACACTTCCATGCTGCTGT
TCATCACCAAAGGAAGTCAGGACTGGAACTTAAGCAGGTCAGAAAGCAGG
AGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTCAGCCT
GCTCTCTTATAGAACCAAGATTACCAGCCCAGAGATGGTCCCACCCACAA
GGGGCCTTTCCTGCCTTATCACTAATTGAGAAAATGCCTTACAGTTGGAT
CTCCTAGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCA
GCTGTGTCAAGTTGACACAAAACTAGCCAGTACAATGTTTTTATTGCTAT
AACACAATGACACGAGAACAGGTCTGTAGTATCTACTCAGTTAGTGTTTG
TTAGCATTAACTAAATTCTAAGTATTACCCATAGTTTAAGCATGTATCCA
TTCTAGGGATGAAGGACCTATGTGGCTAGCTTTTTCACTAAGAATTTGAG
AAAAGCAACTTAGTAAACAATACAAGCAATTTTTTTCTTTCAAGTGATAG
GTATATAGAAACT

NNNCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGAAGGAAAGGCATTCAGA
ATCTCATCATAGTGATAATTAGTTTGCCTATTCCTTAAGCAAGGCTTAAG
GTAAACCAGTTTTCCCTAGAGTAGTCCTGAGTTCTGTAATGGAGGCACAG
TAAAATCACTAAACTAGATGACTTCATGGGTAGAAAGAACAGTTTATTGG
GTGGGGGTGAGGGGCAGGGGAACTGTGGGCTGCCTCAGAGAACAGAGAAC
AGCAACAGGAAAAGGCCTTGTCAATTTTATTGAGGCAGGTATTGAGGTGG
AAGAAGGCAAATGGGCCATGATAGCCTGGCAGTTACTGTGTAGACTTCCA
TCTTCTTTCTATTTGCTGTTTGGATTATCATGACCAAAGTGCCCTTTGCT
GAAAGTGATTGACCACTGTGGGCAGGGCAGGGAAGTTGTGGCTTTCCTGA
ACAACTTGCCTTACCAGCTTCCTGAGGAACTCTGAATTTATGTTTTTGTT
TATCTGGTAAGAATTCTGTCTAGATTAGGCCGGGACAGTAACATTAAGAC
ACGGTCAAGAGCAAGGTCATTTTTTTTTTTTTTTGTGGTGGGGGGGTGGG
GAAGGCCTGTACTTTAAGTCTCCCGAGGGATGGTTCTTTTTACAAGTGAT
TTATGTACTCCATTTGGAATAATAGAGGTATGTTTTAAAACCTTGAAAGG
TCTCTTTTGCGTAGAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_a02.b1 MSMg01no515_a02.b1 CHROMAT_FILE:
MSMg01no515_a02.b1 PHD_FILE: MSMg01no515_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:07 2005
         (645 letters)



>mm_chr6_46560216_46561260
          Length = 1045

 Score = 1218 bits (630), Expect = 0.0
 Identities = 639/642 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttttatagattcctgtacaggaatctctaaggttccattttgctttctcaatg 63
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 ggaattcttttatagattcctgtacaggaatctctaagattccattttgctttctcaatg 263

                                                                       
Query: 64  taattccatacaaaacataattccccaaaaattcctatatgtttgttttagtcagggttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taattccatacaaaacataattccccaaaaattcctatatgtttgttttagtcagggttt 323

                                                                       
Query: 124 ctcttcctgcacaaacatcatgaccaagaagcaagttggggaggaaagggtttattcggc 183
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 ctcttcctgcacaaacatcatgaccaagaagcaagttggggaggaaagagtttattcggc 383

                                                                       
Query: 184 ttacacttccatgctgctgttcatcaccaaaggaagtcaggactggaacttaagcaggtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttacacttccatgctgctgttcatcaccaaaggaagtcaggactggaacttaagcaggtc 443

                                                                       
Query: 244 agaaagcaggagctgatgcagaggccatggagggatgttctttactggcttgctcagcct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaaagcaggagctgatgcagaggccatggagggatgttctttactggcttgctcagcct 503

                                                                       
Query: 304 gctctcttatagaaccaagattaccagcccagagatggtcccacccacaaggggcctttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctctcttatagaaccaagattaccagcccagagatggtcccacccacaaggggcctttc 563

                                                                       
Query: 364 ctgccttatcactaattgagaaaatgccttacagttggatctcctagaggcatttcctca 423
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 564 ctgccttatcactaattgagaaaatgccttacagttggatctcctggaggcatttcctca 623

                                                                       
Query: 424 actgaagctcctttctctgtgataactccagctgtgtcaagttgacacaaaactagccag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actgaagctcctttctctgtgataactccagctgtgtcaagttgacacaaaactagccag 683

                                                                       
Query: 484 tacaatgtttttattgctataacacaatgacacgagaacaggtctgtagtatctactcag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tacaatgtttttattgctataacacaatgacacgagaacaggtctgtagtatctactcag 743

                                                                       
Query: 544 ttagtgtttgttagcattaactaaattctaagtattacccatagtttaagcatgtatcca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttagtgtttgttagcattaactaaattctaagtattacccatagtttaagcatgtatcca 803

                                                     
Query: 604 ttctagggatgaaggacctatgtggctagctttttcactaag 645
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttctagggatgaaggacctatgtggctagctttttcactaag 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_a02.g1 MSMg01no515_a02.g1 CHROMAT_FILE:
MSMg01no515_a02.g1 PHD_FILE: MSMg01no515_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:07 2005
         (557 letters)



>mm_chr6_46752123_46753079
          Length = 957

 Score = 1017 bits (526), Expect = 0.0
 Identities = 547/554 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggaaggaaaggcattcagaatctcatcatagtgataattagtttgcctattccttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tgggaaggaaaggcattcagaatctcatcatagtgataattagtttgcctattccttaag 695

                                                                       
Query: 61  caaggcttaaggtaaaccagttttccctagagtagtcctgagttctgtaatggaggcaca 120
           |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 694 caaggcttaaagtaaaccagtttttcctagagtagttctgagttctgtaatggaggcaca 635

                                                                       
Query: 121 gtaaaatcactaaactagatgacttcatgggtagaaagaacagtttattgggtgggggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gtaaaatcactaaactagatgacttcatgggtagaaagaacagtttattgggtgggggtg 575

                                                                       
Query: 181 aggggcaggggaactgtgggctgcctcagagaacagagaacagcaacaggaaaaggcctt 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 574 aggggcaggggaactgtgggctgcctcagagagcagagaacagcaacaggaaaaggcctt 515

                                                                       
Query: 241 gtcaattttattgaggcaggtattgaggtggaagaaggcaaatgggccatgatagcctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtcaattttattgaggcaggtattgaggtggaagaaggcaaatgggccatgatagcctgg 455

                                                                       
Query: 301 cagttactgtgtagacttccatcttctttctatttgctgtttggattatcatgaccaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cagttactgtgtagacttccatcttctttctatttgctgtttggattatcatgaccaaag 395

                                                                       
Query: 361 tgccctttgctgaaagtgattgaccactgtgggcagggcagggaagttgtggctttcctg 420
           | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 taccctttgctgaaagtaattgaccactgtgggcagggcagggaagttgtggctttcctg 335

                                                                       
Query: 421 aacaacttgccttaccagcttcctgaggaactctgaatttatgtttttgtttatctggta 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 accaacttgccttaccagcttcctgaggaactctgaatttatgtttttgtttatctggta 275

                                                                       
Query: 481 agaattctgtctagattaggccgggacagtaacattaagacacggtcaagagcaaggtca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agaattctgtctagattaggccgggacagtaacattaagacacggtcaagagcaaggtca 215

                         
Query: 541 tttttttttttttt 554
           ||||||||||||||
Sbjct: 214 tttttttttttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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