BAC Information

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BAC

Clone NameMSMg01-515B06
Chromosome6 (Build37)
Map Location 57,961,732 - 57,962,371
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17
Downstream geneEG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515B06.T7 (MSMg01no515_b06.b1)MSMg01-515B06.TJ (MSMg01no515_b06.g1)
ACCAG587406AG587407
length766770
length of high quality
(start - end)		518 (47 - 564)640 (75 - 714)
definitionCHROMAT_FILE: MSMg01no515_b06.b1 PHD_FILE: MSMg01no515_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:14 2005CHROMAT_FILE: MSMg01no515_b06.g1 PHD_FILE: MSMg01no515_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:14 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTAGGTCTGAGCCCCATTTTTTAATGGGATTATTTGATT
TTCTGGAGTCCACCTCCTTGAGTTCTTTATATATATATATATTGGATATT
AGACTCCTATCTGAATTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGG
TGGCCTTTTTGTCTTGTTGACAGTGTCTTTTGCCTTGCAGAAGCTTTGCA
ATTTTATGAGTCTCATTTGTCTATTCTCAATCTTACAGCACAAGTCATTG
CTGTTCTATTCAGGAATTTTTCTCCTGTGCCCATATGTTTAAGGCTTTTC
CCCACTTTTTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTC
CTTAATCCACTTAGATTTAGCCTTAGTATAAGGAGATAGGAATGGATCAA
TTCACATTCTTCTGCATGATAACCACCAGTTGTGCCAGCACCATTTGTTG
AAAATGCTGTCTTTTTTCAACTGGATGGTTTTAGCTCCCTTGTCAAAGAT
CAAGTGACCATANGTGTGCTGGTTCATTTCTGGGTCTTNCATTCTATTCC
ATTGGTCTACTTGTCTGTAGCTATACCAGTACCATGCAGTTTTATCACAA
TTGCTCTGTAGTACAGCTTTAGGTCAGGCATGGTGAATTCANCAGAGGTT
CTTTTATTCTTGAAAAAAGTTTTTGCTATCCTGGGTTTTTTTGTATTCCC
CAATGAACCTGCGGAN

NCATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGCATTTAATTTATTTAAGGGGATC
AAGTAATATCTGTGAATTAATACCTTCTTAATAAGTGATCAGTATTTATT
CCTACTGTCCTCCATTTTATAAAAATTGCCTGGAACTAGCTTGGATGGCT
AAGGTCTTCATCTCCTAAGATTTCTGAAGACTTAGTTTTGTGGCTCGCAG
AGGACAGTACATGAGCTAACATCATGTATATAGTACCAGAAAGCCACATA
CTCACTTCATGATCTCTCTGAGCTGTCATACAAATTTTAGGTCATCATTT
ACTACATATGTTAAAACTTAAAGTAAAATTGATACTTGTCACCTACCTTA
TTTGTATGTCTCTTAGATTACAAAACCTCCATGTTGCAGAAAGCAAAGAT
CATCATAAATTCAAAAAGAAAACTATTCTAAAATTAACTTCTGGAATAAT
GAAAAGGTAAATTAGTTTTTCTTGGGAGAATATAGAGAAAACAGCTCTTG
GTCACTTTTGCTACAGGTCTCTTCAGACACCTGTCTGCACACTGATTAGT
TTTTAAATTCTGAGTCCATTTCATAGTGATGGCTTGTCCACTATTATGAA
TGGTTATGTACACATTTTGGATTTTAATAATTACAACCAATTATTACAAT
TTAAACTAATTGAAAAGACCCCACCACTGCATTATTTTCAAATAAAACAG
AAAACTTTACTTGCTGCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_b06.g1 MSMg01no515_b06.g1 CHROMAT_FILE:
MSMg01no515_b06.g1 PHD_FILE: MSMg01no515_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:14 2005
         (640 letters)



>mm_chr6_57961532_57962571
          Length = 1040

 Score = 1230 bits (636), Expect = 0.0
 Identities = 639/640 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcatttaatttatttaaggggatcaagtaatatctgtgaattaataccttcttaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 atgcatttaatttatttaaggggatcaagtaatatctgtgaattaataccttcttaataa 781

                                                                       
Query: 61  gtgatcagtatttattcctactgtcctccattttataaaaattgcctggaactagcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gtgatcagtatttattcctactgtcctccattttataaaaattgcctggaactagcttgg 721

                                                                       
Query: 121 atggctaaggtcttcatctcctaagatttctgaagacttagttttgtggctcgcagagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 atggctaaggtcttcatctcctaagatttctgaagacttagttttgtggctcgcagagga 661

                                                                       
Query: 181 cagtacatgagctaacatcatgtatatagtaccagaaagccacatactcacttcatgatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cagtacatgagctaacatcatgtatatagtaccagaaagccacatactcacttcatgatc 601

                                                                       
Query: 241 tctctgagctgtcatacaaattttaggtcatcatttactacatatgttaaaacttaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tctctgagctgtcatacaaattttaggtcatcatttactacatatgttaaaacttaaagt 541

                                                                       
Query: 301 aaaattgatacttgtcacctaccttatttgtatgtctcttagattacaaaacctccatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aaaattgatacttgtcacctaccttatttgtatgtctcttagattacaaaacctccatgt 481

                                                                       
Query: 361 tgcagaaagcaaagatcatcataaattcaaaaagaaaactattctaaaattaacttctgg 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 480 tgcagaaagcaaagatcatcataaattcaaaaagaagactattctaaaattaacttctgg 421

                                                                       
Query: 421 aataatgaaaaggtaaattagtttttcttgggagaatatagagaaaacagctcttggtca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aataatgaaaaggtaaattagtttttcttgggagaatatagagaaaacagctcttggtca 361

                                                                       
Query: 481 cttttgctacaggtctcttcagacacctgtctgcacactgattagtttttaaattctgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cttttgctacaggtctcttcagacacctgtctgcacactgattagtttttaaattctgag 301

                                                                       
Query: 541 tccatttcatagtgatggcttgtccactattatgaatggttatgtacacattttggattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tccatttcatagtgatggcttgtccactattatgaatggttatgtacacattttggattt 241

                                                   
Query: 601 taataattacaaccaattattacaatttaaactaattgaa 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 taataattacaaccaattattacaatttaaactaattgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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