Query= MSMg01no515_k20.b1 MSMg01no515_k20.b1 CHROMAT_FILE:
MSMg01no515_k20.b1 PHD_FILE: MSMg01no515_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:05 2005
(664 letters)
>mm_chr6_19010703_19011766
Length = 1064
Score = 1125 bits (582), Expect = 0.0
Identities = 619/644 (96%), Gaps = 20/644 (3%)
Strand = Plus / Minus
Query: 5 gaattcacatttcatttcacaaaatgtttagctccattttgaccatgaggtcaccatgtt 64
|||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 644 gaattcacatttcagttcataaaatgtttagctccatttttaccatgaggtcaccatgtt 585
Query: 65 ttcaatagtaacttaaaagaaaagacattgttgcaattataaaatatttaagtttgagtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ttcaatagtaacttaaaagaaaagacattgttgcaattataaaatatttaagtttgagtt 525
Query: 125 gaccaaagtattctgtaaattcttactctaacttttctaaataaagatattgtcttaaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 524 gaccaaagtattctgtaaattcttactctaacttttctaaataaagatattgtcttagga 465
Query: 185 tgttatttttatttggtatagtagctataaaaacattctatttcttggcataccatgtaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgttatttttatttggtatagtagctataaaaacattctatttcttggcataccatgtaa 405
Query: 245 tctatgaatcagtaggatcaatacatcaagatgagcactgctacataaaatgaaaatgct 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 404 tctatgaatcagtaggatcaatacatcacgatgagcactgctacataaaatgaaaatgct 345
Query: 305 agggttattggattattgttagaattgacattcttgctaaaaatttctttttcttctctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agggttattggattattgttagaattgacattcttgctaaaaatttctttttcttctctt 285
Query: 365 aactttgcttttcagccaattatgactactaaaggcagtaacagtaaagaatctgaaata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aactttgcttttcagccaattatgactactaaaggcagtaacagtaaagaatctgaaata 225
Query: 425 acaacaaaaaattaactaaccatacgtctttccacaagtgcttcttgtcaccattttaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 acaacaaaaaattaactaaccatacgtctttccacaagtgcttcttgtcaccattttaca 165
Query: 485 gtcatgtcctt--------------------ctaaatgtcttatcacatacctaaataat 524
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 164 gtcatgtccttctaaatgtcttatcacatacctaaatgtcttatcacatacctaaataat 105
Query: 525 cacctacagaccatgaatctttatgcaattgacaaatggtttgctatctctagcaaaatg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 cacctacagaccatgaatctttatgcaattgacaaatggtttgctatctctagcaaaatg 45
Query: 585 cacaatcagtttcaacaacttaagatccaagaactgggacgatt 628
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 cacaatcagtttcaacaacttaagatccaagaactgggacgatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_k20.g1 MSMg01no515_k20.g1 CHROMAT_FILE:
MSMg01no515_k20.g1 PHD_FILE: MSMg01no515_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:06 2005
(625 letters)
>mm_chr6_18860610_18861634
Length = 1025
Score = 1201 bits (621), Expect = 0.0
Identities = 624/625 (99%)
Strand = Plus / Plus
Query: 1 ctcagagcagtggagctaacataatcatttattaagtagccttagaattacttcaacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagagcagtggagctaacataatcatttattaagtagccttagaattacttcaacatt 260
Query: 61 ttttctttttatctcactttaatgacttccataagttaacaaaacatttaaaactggcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttctttttatctcactttaatgacttccataagttaacaaaacatttaaaactggcca 320
Query: 121 aataattacccatatttttaaataaatatggtaaattaaattattttaaatttgaattct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataattacccatatttttaaataaatatggtaaattaaattattttaaatttgaattct 380
Query: 181 gtatgaagggccttgtataactccttggtgactaattataaactatgtgctggggagaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatgaagggccttgtataactccttggtgactaattataaactatgtgctggggagaac 440
Query: 241 atggctgagaaatattcagcatataggctcctatatttcctttcatttggtctataccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 atggctgagaaatattcagcatataggctcctatatttcctttcatttggtctatactta 500
Query: 301 tgattactatatttataattaaatgatcagataaaattaaacctactgagcaggcatggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgattactatatttataattaaatgatcagataaaattaaacctactgagcaggcatggc 560
Query: 361 ttttgtattctatgctaaagccctccatctctaaagtgacagtaaattccatcaatattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgtattctatgctaaagccctccatctctaaagtgacagtaaattccatcaatattc 620
Query: 421 aatttccctgcccagtgttagctgacttatactaccatacattgcactcacgggaaaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatttccctgcccagtgttagctgacttatactaccatacattgcactcacgggaaaagg 680
Query: 481 agggccagggcatggtctgctgcattttatttatgaaaacacggttctcattttgtttgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agggccagggcatggtctgctgcattttatttatgaaaacacggttctcattttgtttgc 740
Query: 541 actggataagaatagagtagcatattccaaacacttttactgctcatttatgtgtggaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actggataagaatagagtagcatattccaaacacttttactgctcatttatgtgtggaaa 800
Query: 601 atggttccgtgagcaaatttaagta 625
|||||||||||||||||||||||||
Sbjct: 801 atggttccgtgagcaaatttaagta 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
