Query= MSMg01no516_a23.b1 MSMg01no516_a23.b1 CHROMAT_FILE:
MSMg01no516_a23.b1 PHD_FILE: MSMg01no516_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:38 2005
(522 letters)
>mm_chr6_53443535_53444456
Length = 922
Score = 866 bits (448), Expect = 0.0
Identities = 477/490 (97%), Gaps = 6/490 (1%)
Strand = Plus / Plus
Query: 3 gaattctgtcagctgtcaagaatctcaaagttttaggcagagtactccttggagcccatg 62
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctgtcagctgggaagaatctcaaagttttaggcagagtactccttggagcccatg 262
Query: 63 aggggaccaaatattaaaggctatgtggaaaggcaggggctttgatgcccttttctttgt 122
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agaggaccaaatattaaaggctatgtggaaaggcaggggctttgatgcccttttctttgt 322
Query: 123 gaaaactataaatgtttacttgaagagcctctacccgaaggtgggcacctgtagacttgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaaaactataaatgtttacttgaagagcctctacccgaaggtgggcacctgtagacttgg 382
Query: 183 gaaaacattatcccaacaaaatgaaaggccagattgcggtcatgattctccggagctttc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaaaacattatcccaacaaaatgaaaggccagattgcggtcatgattctccggagctttc 442
Query: 243 aacagcatagttaaaccaaactacttttcctccctctggcttcctttgtttttctccagc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aacagcatagttaaaccaaactacttttcctccctctggcttcctttgtttttctccagc 502
Query: 303 ccttgccctttgaaacaaacactgtgcagcacagaacacagtgtttcctgggtagtgttg 362
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 503 ccttgccctttgaaacaaacactgtgcagcacagaacacagtgtttcctgggcagtgttg 562
Query: 363 caggctgcgagctctgcttattaatcatgacacagggctctgagtggtcgtacatggctt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caggctgcgagctctgcttattaatcatgacacagggctctgagtggtcgtacatggctt 622
Query: 423 cctcttgtgccatatagatctctctctctctctctctctctctctctctctc------tc 476
||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||
Sbjct: 623 cctcttgtgccatatagatatctctctctctctctctctctccctctccctccccccctc 682
Query: 477 tctctctctc 486
||||||||||
Sbjct: 683 tctctctctc 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_a23.g1 MSMg01no516_a23.g1 CHROMAT_FILE:
MSMg01no516_a23.g1 PHD_FILE: MSMg01no516_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:38 2005
(554 letters)
>mm_chr6_53638813_53639760
Length = 948
Score = 1029 bits (532), Expect = 0.0
Identities = 546/554 (98%), Gaps = 6/554 (1%)
Strand = Plus / Minus
Query: 1 tctcactttatcaatggaggaaaaattcacctttgttggctgtagcaccacgtctagcct 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 748 tctcactttatcaatggaggaaaaattcacctttgttggctgtagcaccatgtctagcct 689
Query: 61 aggtgcccagatacagctttttaaaaagtataaataatagacacacactctttgactgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aggtgcccagatacagctttttaaaaagtataaataatagacacacactctttgactgaa 629
Query: 121 gtcgatcctttcctttctcagctgtggagtgacttgggggctgctgttcttaaagctatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gtcgatcctttcctttctcagctgtggagtgacttgggggctgctgttcttaaagctatt 569
Query: 181 tagataatgatggtaagagagggaccctgtcacactgatgtgtttttaaacccataaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tagataatgatggtaagagagggaccctgtcacactgatgtgtttttaaacccataaatc 509
Query: 241 tgcctggggatgaagtagggattgcatggaggtgttccacactgtgatagcaccctttaa 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 508 tgcctggggatgaagtagggattgca------tgttccacactgtgatagcaccctttaa 455
Query: 301 acagcacgttcagtatcccctgacaggcacatttacagcttggggctctgatgatgtcgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 acagcacgttcagtatcccctgacaggcacatttacagcttggggctctgatgatgtcgt 395
Query: 361 tttgttatatgacaaatctacaatccccccccccttttttttgtataagctggagtttgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttgttatatgacaaatctacaatccccccccccttttttttgtataagctggagtttgt 335
Query: 421 gccaaaaacataattatcacaaagggcccagaatcccaccccctttttcagattagctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gccaaaaacataattatcacaaagggcccagaatcccaccccctttttcagattagctga 275
Query: 481 gggcaggtttggtccctcagaaacaaaggactttcaatttgtcaagcaacagtttccatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gggcaggtttggtccctcagaaacaaaggactttcaatttgtcaagcaacagtttccatc 215
Query: 541 tggccagctcccct 554
||||| ||||||||
Sbjct: 214 tggcccgctcccct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 948
Length adjustment: 10
Effective length of query: 544
Effective length of database: 938
Effective search space: 510272
Effective search space used: 510272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
