Query= MSMg01no516_b11.b1 MSMg01no516_b11.b1 CHROMAT_FILE:
MSMg01no516_b11.b1 PHD_FILE: MSMg01no516_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:40 2005
(614 letters)
>mm_chr6_128680971_128681984
Length = 1014
Score = 820 bits (424), Expect = 0.0
Identities = 427/428 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaaaaacagctaatacagttctgtgtttttgtttttgtttttgagaaatgtata 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggaattcaaaaacagctaatacagttctgtgtttttgtttttgtttttgagaaatgtata 369
Query: 64 ttcaaataatttatatgttaaaaatctagattatgtggtctttgttagtttgtagttact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttcaaataatttatatgttaaaaatctagattatgtggtctttgttagtttgtagttact 309
Query: 124 cagatatgctagatattaattccataaaatatgtgagaataatgtttcctcatttcctca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cagatatgctagatattaattccataaaatatgtgagaataatgtttcctcatttcctca 249
Query: 184 gttacttttctgttgtgaagaaacatcatgaggaagtgaacatatacaagaaaaatgttt 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 248 gttacttttctgttgtgaagaatcatcatgaggaagtgaacatatacaagaaaaatgttt 189
Query: 244 atttgggcacatagttccagagttaaagtctgggtcatggggtagcctgcaggtaggtgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 atttgggcacatagttccagagttaaagtctgggtcatggggtagcctgcaggtaggtgt 129
Query: 304 gtgatggagcagcagttgagatctcatatcctgttctgcaagtaggaaaaaggcagagtt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gtgatggagcagcagttgagatctcatatcctgttctgcaagtaggaaaaaggcagagtt 69
Query: 364 ctaatttgggacaccataggatttgaagtatcaaagagacaacttcccacaaggacacat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ctaatttgggacaccataggatttgaagtatcaaagagacaacttcccacaaggacacat 9
Query: 424 ctccttat 431
||||||||
Sbjct: 8 ctccttat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_b11.g1 MSMg01no516_b11.g1 CHROMAT_FILE:
MSMg01no516_b11.g1 PHD_FILE: MSMg01no516_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:40 2005
(546 letters)
>mm_chr6_128489186_128490129
Length = 944
Score = 895 bits (463), Expect = 0.0
Identities = 525/551 (95%), Gaps = 12/551 (2%)
Strand = Plus / Plus
Query: 1 actttgtagaccaggctggtcttgaactcagaaatctgcctgcctctgcctcccgagtgc 60
||||||||||||||| |||||| ||||||||||||| |||||||||||||||| ||||||
Sbjct: 201 actttgtagaccaggttggtctcgaactcagaaatccgcctgcctctgcctcctgagtgc 260
Query: 61 tgggattaaagatgtgtgccaccacgtcgggcccaactgatttttaaaatgaccaaaagc 120
||||||||||| |||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggtgtgcgccaccacgcccggcccaactgatttttaaaatgaccaaaagc 320
Query: 121 tctgaagtcaccctctcaacccagtactcagtacatccatcccttaactcagagctcttt 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgaagtcaccctctgaacccagtactcagtacatccatcccttaactcagagctcttt 380
Query: 181 tgtgcttcccacctgctgtgatttccggttgttccctgagagattg---tgttttactgt 237
||||||||||||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct: 381 tgtgcttcccacctgctgtgatttccgattgttccctgagag---gccttgttttactgt 437
Query: 238 gtgtatttctgttgagctgaaacagagtactttcctactttaatctaatctcctccacct 297
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 438 gtgtatttctgttgagctgaagcagagtactttcctactttaatc--atctcctccacct 495
Query: 298 ccacttctatttcgctctgtttttgggattccagttctgtacagttcaggtgcccaaact 357
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ccacttctatttcgctctgtctttgggattccagttctgtacagttcaggtgcccaaact 555
Query: 358 tgaggttaaacttgacagaaatgaagcaaatcatttagttgctctcaaaaccctgagact 417
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 556 tgaggttaaacttgacagaaatgaagcaaatcattcggttgctctcaaaaccctgagact 615
Query: 418 tctataatggaaacaacaaagaatagaaaacagtggcctcagacttaaaatgatgccatt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tctataatggaaacaacaaagaatagaaaacagtggcctcagacttaaaatgatgccatt 675
Query: 478 taatggaaggaaggaaggaaggaaggaaggaaggaaggaaggaa----ggaaggaaggaa 533
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 676 taatggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaagaaggaaggaaggaa 735
Query: 534 gtgaagctgac 544
|||||||||||
Sbjct: 736 gtgaagctgac 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 944
Length adjustment: 10
Effective length of query: 536
Effective length of database: 934
Effective search space: 500624
Effective search space used: 500624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
