BAC Information

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BAC

Clone NameMSMg01-516I13
Chromosome6 (Build37)
Map Location 66,945,966 - 66,946,532
singlet/doubletsinglet
Overlap geneGng12
Upstream genePpia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik
Downstream geneLOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516I13.T7 (MSMg01no516_i13.b1)MSMg01-516I13.TJ (MSMg01no516_i13.g1)
ACCAG588506AG588507
length744745
length of high quality
(start - end)		627 (54 - 680)613 (80 - 692)
definitionCHROMAT_FILE: MSMg01no516_i13.b1 PHD_FILE: MSMg01no516_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:18 2005CHROMAT_FILE: MSMg01no516_i13.g1 PHD_FILE: MSMg01no516_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCAAGTGATTCAAAATTAAGAATATTGTAGTCTGTAA
TTTAATCACAAAGTCCTTATCTGTTCCTGTTAGCTCCCAAATGAATGAAA
CAAAGATTAAGTTTATTAACAATCTGTAAGCCTAGGCTAGGCAGGTTCTG
AGCTGTTCTAATCCTCTAGGGCTGTTTTTCAGCCACATGGTTCTTGACCT
TCAATCTGAGTCTGCCCCTGGTTTGCTCTGCTCCATGTGTGTCCTCATGA
TGAATCCCTTGGCAACCTGCTTTGTTAAGACTCCTCTTAGACCCTCTGCC
TTATGGCCACCTCTTGGTCTCTCCACTGGGTCTCTCTCTTTTTTCTTCAT
GATCCTTCCTCTCCTTCTCCATGGGACCCCTGGCTGGGATCACAAGTCCA
GCCTTCCTATCTCCTCTGCCCAGCCATAGGCTGACCAGCTTCTTATCAAC
CAGTCCGATACTTATGGAGCACTCGTTACACAACACTGGTATAGCAGATG
GTTCCATAATCATAACGGTGCTAGCTAGTGTCATTAGATCTCTGGACACA
GGAATCAGCATCTGAATATACAGTGTATAAGACTCACTCGCAACACAGTA
TCTTGTTTGGGGGCCAGCAAAATGGCTAACTGGGCAAAGGCACTTTCTGC
CATGTCTGGTGTGAGTTTGATTCTCAGAACCTATGTGGTCCCTC

NNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGCTTTCCCACGTATTTGA
TTAGGACAAATATGTTCACTCTGTGAACCCTCACCTCCAGTATGAGAGTT
TCCAAGAACCATGCTACTGTGTACCCATGTGAGGTATCTAAACAAGTTTT
CAGTTTGAGGGAGGTCCAAGAGGTGTCCTATGACCTATAGCAGTGCAGTT
CTTGGCCCCTGCTTTAATGGTGGGCCATGCTCCATCCATCTGCCCAGACA
AATTTTTATAGTTAACACTGGGAACAATGCTTATGATCAAGTTTTACCTG
AAACCTAGTTCAGCAAGAAACTATTGGCTCAGAAAATATTTGTTTATGTC
TGCATGGCTGGTTTAAGATAACTAAATGGCTCATGTGTTTATTCAAGAAT
GAATGAATGAATGAATGTTAAAAAGTGGTAATGTGGGGAGAGAGGAAGGC
TTCAGTTAATGTATGTTGACATGAGCTATGTCAAGGACCCCAATGCCTCA
GATCAGTGGGAGTGGCAAAGGCTTCCTCTGGTCCAAATGGGAGTGGTGTA
TGTAGAAACTATCAACCACAGCTTCCTTCTCCAGGATGACTGAAGCCTGA
GACTGCTAAATCTACCTCCTTTGTTTCAGCTGTATACAATAAACCCACCT
CCTAGATTTTGATGCATAAAATAGGTTCAGGCCTGTGCAGGCGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_i13.g1 MSMg01no516_i13.g1 CHROMAT_FILE:
MSMg01no516_i13.g1 PHD_FILE: MSMg01no516_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:18 2005
         (613 letters)



>mm_chr6_66945966_66946978
          Length = 1013

 Score = 1073 bits (555), Expect = 0.0
 Identities = 564/567 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggctttcccacgtatttgattaggacaaatatgttcactctgtgaaccctcacctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctggctttcccacgtatttgattaggacaaatatgttcactctgtgaaccctcacctcca 508

                                                                       
Query: 61  gtatgagagtttccaagaaccatgctactgtgtacccatgtgaggtatctaaacaagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtatgagagtttccaagaaccatgctactgtgtacccatgtgaggtatctaaacaagttt 448

                                                                       
Query: 121 tcagtttgagggaggtccaagaggtgtcctatgacctatagcagtgcagttcttggcccc 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcagtttgagggaagtccaagaggtgtcctatgacctatagcagtgcagttcttggcccc 388

                                                                       
Query: 181 tgctttaatggtgggccatgctccatccatctgcccagacaaatttttatagttaacact 240
           |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 387 tgctttaatggtgggccatgctccattcatctgtccagacaaatttttatagttaacact 328

                                                                       
Query: 241 gggaacaatgcttatgatcaagttttacctgaaacctagttcagcaagaaactattggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gggaacaatgcttatgatcaagttttacctgaaacctagttcagcaagaaactattggct 268

                                                                       
Query: 301 cagaaaatatttgtttatgtctgcatggctggtttaagataactaaatggctcatgtgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagaaaatatttgtttatgtctgcatggctggtttaagataactaaatggctcatgtgtt 208

                                                                       
Query: 361 tattcaagaatgaatgaatgaatgaatgttaaaaagtggtaatgtggggagagaggaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tattcaagaatgaatgaatgaatgaatgttaaaaagtggtaatgtggggagagaggaagg 148

                                                                       
Query: 421 cttcagttaatgtatgttgacatgagctatgtcaaggaccccaatgcctcagatcagtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cttcagttaatgtatgttgacatgagctatgtcaaggaccccaatgcctcagatcagtgg 88

                                                                       
Query: 481 gagtggcaaaggcttcctctggtccaaatgggagtggtgtatgtagaaactatcaaccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  gagtggcaaaggcttcctctggtccaaatgggagtggtgtatgtagaaactatcaaccac 28

                                      
Query: 541 agcttccttctccaggatgactgaagc 567
           |||||||||||||||||||||||||||
Sbjct: 27  agcttccttctccaggatgactgaagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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