Query= MSMg01no516_k06.b1 MSMg01no516_k06.b1 CHROMAT_FILE:
MSMg01no516_k06.b1 PHD_FILE: MSMg01no516_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:27 2005
(716 letters)
>mm_chr6_15863258_15864372
Length = 1115
Score = 1299 bits (672), Expect = 0.0
Identities = 703/714 (98%), Gaps = 3/714 (0%)
Strand = Plus / Minus
Query: 4 ggaattccagggccagtaatcgggagtgggtgggatagggagcagggtgggggctggtat 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 ggaattccagggccaggaatcgggagtgggtgggatagggagcagggtgggggctggtat 975
Query: 64 aggggactttggggatagtatttgaattgttaataagaaaataatctaattttaaaaaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 aggggactttggggatagtatttgaattgttaataagaaaataatctaattttaaaaaaa 915
Query: 124 gaagatgcactgtgtttctacctctagctctgtctactgacacagagagttctgcttgtt 183
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 914 gaagatgcactgtgtttctacctctagctctgtctactg--acagagagttctgcttgtt 857
Query: 184 caaagggtgttactgtagtgcagtagtaaatatcttttgttatttatggacaagcatgtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 caaagggtgttactgtagtgcagtagtaaatatcttttgttatttatggacaagcatgtg 797
Query: 244 ggaacctccccccaaaagaagatagtgacaccagagtaaatagcaagctaaaattatgtc 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 796 ggaacctccccccaaaagaagatagttacaccagagtaaatagcaagctaaaattatgtc 737
Query: 304 atatcacctcagccaaattgactccttaatgctgcttttgttttccttgaatgaataagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 736 atatcacctcagccaaattgactccttaatgctgcttttgttttccttgaatgaagaagt 677
Query: 364 tccatctgaatacctgatttcagtggcattacagattttgcaggaaaggactatagttga 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cccatctgaatacctgatttcagtggcattacagattttgcaggaaaggactatagttga 617
Query: 424 gttaaatgggtattcaaagcaccatggctcatgttttgctaaaaccttcagtccatagtg 483
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 616 gttaaatgggtattcaaagcaccatggctcatgccttgctaaaaccttcagtccatagtg 557
Query: 484 acatttaatacagtaaggttaaagaagagaaaattgctaaaaagatatgaaattcaccca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 acatttaatacagtaaggttaaagaagagaaaattgctaaaaagatatgaaattcaccca 497
Query: 544 tttctgttaaacaaagaattcaatatccttaacagca-ttttttaaagttgggttttatt 602
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 496 tttctgttaaacaaagaattcaatatccttaacagcatttttttacagttgggttttatt 437
Query: 603 cttttatacaaaggaacatgtcaaactattaatttttgagcacaatattatgcaagtttt 662
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 436 cttttatacaaaggaacatgtcaaactatcaatttttgagcacaatattatgcaagtttt 377
Query: 663 caactagagataacttttaaacaggatcctggatccagtataatgatttctagt 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 caactagagataacttttaaacaggatcctggatccagtataatgatttctagt 323
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1115
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1105
Effective search space: 780130
Effective search space used: 780130
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no516_k06.g1 MSMg01no516_k06.g1 CHROMAT_FILE:
MSMg01no516_k06.g1 PHD_FILE: MSMg01no516_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:27 2005
(374 letters)
>mm_chr6_15698139_15698909
Length = 771
Score = 696 bits (360), Expect = 0.0
Identities = 370/374 (98%), Gaps = 3/374 (0%)
Strand = Plus / Plus
Query: 1 cataaatcatgataagactgttgagttaactgagataagaaaggaaggtgttttgtctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaatcatgataagactgttgagttaactgagataagaaaggaaggtgttttgtctag 260
Query: 61 attaggtacagaggattgcaggaaggaagaaacaggaagtgggtttcgctctagagtctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaggtacagaggattgcaggaaggaagaaacaggaagtgggtttcgctctagagtctc 320
Query: 121 cctctcagatctttcaatagggtctcactctaggcaagactggccaggctagcttcaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctcagatctttcaatagggtctcactctaggcaagactggccaggctagcttcaaaa 380
Query: 181 tcatggcaaccctcctgcctcagcctctggagctcagatgtgaaccatttggtgttattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatggcaaccctcctgcctcagcctctggagctcagatgtgaaccatttggtgttattc 440
Query: 241 acgaggttcattatttggtgaggtgaaggcaggcagatgaaacaagtgctgggaacaagg 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaggttcattatttggtgaggtgaaggcaggcagatgaaacaagtgctgggaacaagg 500
Query: 301 ctaaggattttggttcaaataaatgttaattgttatgcaaggacaatgggccaccccccc 360
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 501 ctaaggattttggttcaaataaatgttaattgttatgcaaggacaatg--cc-ccccccc 557
Query: 361 ccccgcatttaagg 374
||||||||||||||
Sbjct: 558 ccccgcatttaagg 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 771
Length adjustment: 9
Effective length of query: 365
Effective length of database: 762
Effective search space: 278130
Effective search space used: 278130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
