Query= MSMg01no516_l03.b1 MSMg01no516_l03.b1 CHROMAT_FILE:
MSMg01no516_l03.b1 PHD_FILE: MSMg01no516_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:32 2005
(672 letters)
>mm_chr6_99110829_99111900
Length = 1072
Score = 1276 bits (660), Expect = 0.0
Identities = 666/668 (99%)
Strand = Plus / Minus
Query: 5 gaattctggatcctcttgtctccacctcccaaatagttgaattccagacaatcattaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gaattctggatcctcttgtctccacctcccaaatagttgaattccagacaatcattaaaa 813
Query: 65 tgcatcagtatctcaaatgcagtattaaaatatcaccatagactgtgaacccattagtta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tgcatcagtatctcaaatgcagtattaaaatatcaccatagactgtgaacccattagtta 753
Query: 125 tcagttggtgccgcattggaccatagacccagttggggaaaagatctgggaaaggaaaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tcagttggtgccgcattggaccatagacccagttggggaaaagatctgggaaaggaaaag 693
Query: 185 aaagggaggttggcagacaaaccaagtcggttcacaggggttttgcggcatgacttgatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aaagggaggttggcagacaaaccaagtcggttcacaggggttttgcggcatgacttgatc 633
Query: 245 tcttttcttgtcaccccagccatttctgcctccacccagtcagcctgaatttatgtcact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tcttttcttgtcaccccagccatttctgcctccacccagtcagcctgaatttatgtcact 573
Query: 305 ttgtgctgtattaatttagtgtattaatttagtgctcgatggctgagttctaaaccattc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttgtgctgtattaatttagtgtattaatttagtgctcgatggctgagttctaaaccattc 513
Query: 365 atgctagcaaacctagcactaaatggcaggagtgtatttgtactaatgttcatcagtgtg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atgctagcaaacctagcactaaatggcaggagtgtatttgtactaatgttcatcagtgtg 453
Query: 425 atagccttgcatatttatgggtaaacgagtagttttagaatatcgtctgctctgccctta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 atagccttgcatatttatgggtaaacgagtagttttagaatatcgtctgctctgccctta 393
Query: 485 gaagatggaggtcaagatcagccatttccttatgacgtagttgaggtgaggcccgtgcag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gaagatggaggtcaagatcagccatttccttatgacgtagttgaggtgaggcccgtgcag 333
Query: 545 tgtgcaccccaaatcatttgcatctagagaacatcagttaaataagtgggagattaacct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtgcaccccaaatcatttgcatctagagaacatcagttaaataagtgggagattaacct 273
Query: 605 tttttaaaattttacctggtagatggacaattaattattcagaatattgagatatttaac 664
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tttttttaattttacctggtagatggacaattaattattcagaatattgagatatttaac 213
Query: 665 cgaggagc 672
||||||||
Sbjct: 212 cgaggagc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_l03.g1 MSMg01no516_l03.g1 CHROMAT_FILE:
MSMg01no516_l03.g1 PHD_FILE: MSMg01no516_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:32 2005
(684 letters)
>mm_chr6_98920312_98921394
Length = 1083
Score = 1292 bits (668), Expect = 0.0
Identities = 680/684 (99%), Gaps = 1/684 (0%)
Strand = Plus / Plus
Query: 1 tacctaaatacctgtgagacatgaggatttgtgtattatctggaaggaacgtacatcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacctaaatacctgtgagacatgaggatttgtgtattatctggaaggaacgtacatcctc 260
Query: 61 ataaaaatgagaacagaattatatagtcaagacacattctggatcaaaaacgcatttgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ataaaaatgagaacagaattatatagtcaagacacattctggatcaaaaacacatttgga 320
Query: 121 aagaatgtgaccctgttcacacatctccaaagacccgccctggacacgatccgtttaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaatgtgaccctgttcacacatctccaaagacccgccctggacacgatccgtttaagt 380
Query: 181 ctctggcacaatgcacctcttgtttatcaccatgtgggagaagctcagtgagagatttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctggcacaatgcacctcttgtttatcaccatgtgggagaagctcagtgagagatttaa 440
Query: 241 aaagaagaagaagaagaaaaaaaaatccttccaaaaataaagccagcgaatgctaagcag 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaagaagaagaagaaaaaaaa-tccttccaaaaataaagccagcgaatgctaagcag 499
Query: 301 agagggacaaactgcagtgcttcctccccgtgtgtgagagacaccggctatttcaacagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agagggacaaactgcagtgcttcctccccgtgtgtgagagacaccggctatttcaacagc 559
Query: 361 tgattccaccctcaaagtatacagcgcacataaaataaacacgggtcacgaaaattaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgattccaccctcaaagtatacagcgcacataaaataaacacgggtcacgaaaattaaca 619
Query: 421 agtcatcctaactgtctcatacatcctgggctggctgcggaaaagccagctcgttctgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agtcatcctaactgtctcatacatcctgggctggctgcggaaaagccagctcgttctgga 679
Query: 481 tttatatctgtaagtatgggatttcctggacagctagtatccacaaacaatcacatgcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 680 tttatatctgtaagtatgggatttcctggacagctagtatccacaaacaatcacacgcag 739
Query: 541 gaggaccacagagagaaaggcagcgctatttcacatttgagctgagagccgtgatttgta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaggaccacagagagaaaggcagcgctatttcacatttgagctgagagccgtgatttgta 799
Query: 601 aaaggccgaacaggaactggagttgaaacctgatgcgagcaaattcttcggcaaggcact 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aaaggccgaacaggaactggagttgaaacctgatgcgagcaaattcttcggcaaggcact 859
Query: 661 gatggacactgggctgctgctctt 684
|||||||||||||||| |||||||
Sbjct: 860 gatggacactgggctgttgctctt 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1083
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1073
Effective search space: 723202
Effective search space used: 723202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
