NNNTTTATCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXGGGNGGAATTCTCAACTTATTCATACCTAATGGCTTAGAAGCACCTGA
AAAAGTGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAAATTTCACTTCACACCAGTCAGAATGGCTAAGATCAAAGGTTCAGG
TGACAGCAGTTGCTGGTAAGGATGTGGAGAAAGAGGGACACTCCTCCATT
TTTGGTGGGATTGCAAGCTGAGATAAACGCTCTGGAAATCAACCTGGTGG
TTCCTCAGAAAATTGGACATAGTAGTACCTGAAGATCCGTCAATACCTCT
CCTTGGCATATACCCAGAAGATGTTCCAACTTGTAATAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCGAGATGTCCCTCAACAGAAGAATGGATACAGAAAATATGGTATATTTA
CACAATGGAGTACTACTTAGCCTTTAAAAACAATGAATTTACAAAATTCT
TAGGCAAATGGATGTATCTGGAGGATATCATCCTGAGCGAGCTAGCCAAA
TCACAAAAGAACACACATGATATGCACTCACTGACAAATGGATATTAGCC
CCTGAACTAGAANTCCAAGATACTATTTGCAATCANCATGAACTCAAGAT
TAAGAAGACCAAGTGTGGATTCTTCGCTTCTCCTAGATGGGGAGCAAATA
CCATTGGAGGAGTACGAGAAAA

NGGTTGTNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAGATAGTGAAAAA
CTGAAATGGAAGAAGGGGTAGCACTTAATTAAAACTTATGGCATTTATAA
ATGAAGTAAGAGTTATGAACTATAGATTACAAACAATATTACATGTTAAT
AAAACCATTGTTTCCCATAAAAGTGTCTGCAGGTTTTAGCTAAGTGAATT
ATTAATATCTTCATAGCAGGCTGTTATGTCTTATGTGGGAAATGACAGCT
GGTTCCCCTTTGATGAGCACATCTCCTTCTGAGAATTATGAGGTCTGTTT
TAAAAGCTCCCCATGTTTGACAGATTAAAACATTGGGAGTCTGAGGATTT
ATCTCATGTGGCGTAGTGCTTTATTGCCAACTAAAGTTGTGTTGGTACGT
CTAATAGAACCACCAATTTTCAGTCCTATACAGTTTCTTTCCCTTTTCAA
AGACTACATTGAGTATATAAAACAGTGTGTTTTTTTTACAAACACACACA
CACACACACACACACACACACACACACACACACACACGAATATAGAGCGG
TTTGATCCCAGTCAGGGATGTTTTTATTATGATGCTCATTGTCAGACTAA
GTCAATTCTCCCTGACCTATATACTTCTCTTGGCTGGTTCTTTCCAGAAA
AGGAATAATTATATCTCTGTAAAAAATGCAAATCATTTTTCTTTGCTTTC
TAGCCACTGTGCTGACATCTTTTGTGAGGCT

Query= MSMg01no516_o24.g1 MSMg01no516_o24.g1 CHROMAT_FILE:
MSMg01no516_o24.g1 PHD_FILE: MSMg01no516_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:51 2005
         (504 letters)



>mm_chr6_110386361_110387264
          Length = 904

 Score =  888 bits (459), Expect = 0.0
 Identities = 496/515 (96%), Gaps = 13/515 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagatagtgaaaaactgaaatggaagaaggggtag-cacttaattaaaacttatggca 59
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 201 aacagatagtgaaaaactgaaatggaagaagggg-aggcacttaattaaaacttatggca 259

                                                                       
Query: 60  tttataaatgaagtaagagttatgaactatagattacaaacaatattacatgttaataaa 119
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 260 tttataaatgaagtaagagttatgaactatagattacaaaaaatattacatgttaataaa 319

                                                                       
Query: 120 accattgtttcccataaaagtgtctgcaggttttagctaagtgaattattaatatcttca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 accattgtttcccataaaagtgtctgcaggttttagctaagtgaattattaatatcttca 379

                                                                       
Query: 180 tagcaggctgttatgtcttatgtgggaaatgacagctggttcccctttgatgagcacatc 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagcaggttgttatgtcttatgtgggaaatgacagctggttcccctttgatgagcacatc 439

                                                                       
Query: 240 tccttctgagaattatgaggtctgttttaaaagctccccatgtttgacagattaaaacat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccttctgagaattatgaggtctgttttaaaagctccccatgtttgacagattaaaacat 499

                                                                       
Query: 300 tgggagtctgaggatttatctcatgtggcgtagtgctttattgccaactaaagttgtgtt 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 500 tgggagtctgaggatttatctcatgtggcgtagtgctttattgccaactaaatttgtgtt 559

                                                                       
Query: 360 ggtacgtctaatagaaccaccaattttcagtcctatacagtttctttcccttttcaaaga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggtacgtctaatagaaccaccaattttcagtcctatacagtttctttcccttttcaaaga 619

                                                                       
Query: 420 ctacattgagtatataaaacagtgtgtttt-----------ttttacaaacacacacaca 468
           ||||||||||||||||||||||||||||||           ||||||||||| ||| |||
Sbjct: 620 ctacattgagtatataaaacagtgtgttttggtatgatattttttacaaacaaacaaaca 679

                                              
Query: 469 cacacacacacacacacacacacacacacacacac 503
           |||||||||| ||||||||||||||||||||||||
Sbjct: 680 cacacacacatacacacacacacacacacacacac 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)