BAC Information

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BAC

Clone NameMSMg01-517B01
Chromosome6 (Build37)
Map Location 131,334,076 - 131,334,743
singlet/doubletsinglet
Overlap geneCsda
Upstream geneKlra1, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1
Downstream geneLOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517B01.T7 (MSMg01no517_b01.b1)MSMg01-517B01.TJ (MSMg01no517_b01.g1)
ACCAG588910AG588911
length740742
length of high quality
(start - end)
694 (39 - 732)613 (68 - 680)
definitionCHROMAT_FILE: MSMg01no517_b01.b1 PHD_FILE: MSMg01no517_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:01 2005CHROMAT_FILE: MSMg01no517_b01.g1 PHD_FILE: MSMg01no517_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
CTTTTTTTTTATTTTTTATTTTTTTGAATTAAGCCATTAATGGTTTACTC
AAAGGTGTTTAGGCTTTGTGTAATGATACCAGGGCCTTAGTGATAGATTT
AGCTCTTTGTAGGTCAGGTGCTAACATATCTGCTTAATCCCGCCTTTTAG
CCACCAAAGTCCTTGGCACTGTCAAATGGTTCAACGTCAGAAATGGATAT
GGATTTATAAACCGGTATGTGTCTGCATGTCTTGTACCTACTTTGTAGCA
ACAGCAGCTACAAATCCATTGTTCCACTTTATTAATGGGTTGTATATATA
CATTTTGAGATTTCTAAGCATGGTAAATAGTTTTATAATAGTTTTATTTC
TAAGCTTTTGGTCATTAAATATTAATATGCATTCCTAGAATATTCATATA
CTCTAGTGTTTAGGACAGAGATTAGAATTGCAGTCAGAAATGAAAAGAAC
ATTAGGTAGTCCATGTCCATAATTTCACAGATGGAGAAAAAAAGAACCTG
GTTAAGCAACTTTACTTAAGGTCACAAACTAGAGAGTAACTGAGCTGGGC
TGTGAGCCCTGTTCTGGTCTGCTCCAAGTCCTGTGAGGAAAACAGTGTTT
AAACTTCGGTGACTTGTGACCATATCGGAATTCAGGTAACCACAGGCCAC
TTGGAGACACAGAGATGTATTTTACAGGGTGTTGATGTGG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACGGTGGTAATGAA
GTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAG
AACTCTTCAGCTGGGGAACAGGGTACCCGTATGTATAGCTTTACAAGGTA
AGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTA
AAGTGGGGAATAGCTTTACAAGGTAAATCTGGCCTTGAACTTTCTAACGA
AATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTA
AGTCTGATCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTA
AAGTGGGGAACAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGA
AATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTA
TGTTTGGCCTTGAACTTTCTCTAGTGTTAGGAGCCTTTTTGTTCCTTTTC
ACATGTTATCAAGCGGTTAAGGCAGGGCTGAAAATTCTGGATGAAATTCA
GGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGA
AATATGGCGCACAAAATAAGTATACAGGCCTTTCCACGGGTCTTGAACCC
GAGGAAAAGTTTAGGTCAGGTAAGAATATCTGGGGAGAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_b01.b1 MSMg01no517_b01.b1 CHROMAT_FILE:
MSMg01no517_b01.b1 PHD_FILE: MSMg01no517_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:01 2005
         (694 letters)



>mm_chr6_131334076_131335169
          Length = 1094

 Score = 1276 bits (660), Expect = 0.0
 Identities = 666/668 (99%), Gaps = 1/668 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccac-tttttttttattttttatttttttgaattaagccattaatggtttactca 63
           ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaattccacttttttttttagtttttatttttttgaattaagccattaatggtttactca 609

                                                                       
Query: 64  aaggtgtttaggctttgtgtaatgataccagggccttagtgatagatttagctctttgta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aaggtgtttaggctttgtgtaatgataccagggccttagtgatagatttagctctttgta 549

                                                                       
Query: 124 ggtcaggtgctaacatatctgcttaatcccgccttttagccaccaaagtccttggcactg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ggtcaggtgctaacatatctgcttaatcccgccttttagccaccaaagtccttggcactg 489

                                                                       
Query: 184 tcaaatggttcaacgtcagaaatggatatggatttataaaccggtatgtgtctgcatgtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tcaaatggttcaacgtcagaaatggatatggatttataaaccggtatgtgtctgcatgtc 429

                                                                       
Query: 244 ttgtacctactttgtagcaacagcagctacaaatccattgttccactttattaatgggtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttgtacctactttgtagcaacagcagctacaaatccattgttccactttattaatgggtt 369

                                                                       
Query: 304 gtatatatacattttgagatttctaagcatggtaaatagttttataatagttttatttct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtatatatacattttgagatttctaagcatggtaaatagttttataatagttttatttct 309

                                                                       
Query: 364 aagcttttggtcattaaatattaatatgcattcctagaatattcatatactctagtgttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aagcttttggtcattaaatattaatatgcattcctagaatattcatatactctagtgttt 249

                                                                       
Query: 424 aggacagagattagaattgcagtcagaaatgaaaagaacattaggtagtccatgtccata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aggacagagattagaattgcagtcagaaatgaaaagaacattaggtagtccatgtccata 189

                                                                       
Query: 484 atttcacagatggagaaaaaaagaacctggttaagcaactttacttaaggtcacaaacta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 atttcacagatggagaaaaaaagaacctggttaagcaactttacttaaggtcacaaacta 129

                                                                       
Query: 544 gagagtaactgagctgggctgtgagccctgttctggtctgctccaagtcctgtgaggaaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gagagtaactgagctgggctgtgagccctgttctggtctgctccaagtcctgtgaggaaa 69

                                                                       
Query: 604 acagtgtttaaacttcggtgacttgtgaccatatcggaattcaggtaaccacaggccact 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  acagtgtttaaacttcggtgacttgtgaccatatcggaattcaggtaaccacaggccact 9

                   
Query: 664 tggagaca 671
           ||||||||
Sbjct: 8   tggagaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)