XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTAGGAACTAGTAGAAAATATTAATTATATGGCTATACAGATGACACTGT
TCAAAAACTGTGGAACAGAAATAAAAAGTCATGAATGTGTGAAAGAGATG
AGTAAGAAAAGGGAGCATACAGTAGAGGGAATGGTAGGGATAAGAAATGG
TTGGAAATGGAGCCACCATAGTGCAGTACATACATGCACAATATCATCAA
AGAACAAATTTAATTAATATGCATTTACATATAATTTTACATATAGCATC
CATATTTTATAGAAAATATGACATTTGTTCAAGTCTTGTTTACTCTCTGA
AACATGGTAAACTCCAGTTAAATGAGTTTTCTGGTAAATGTTGCATTTTA
ATTTTCCTTACAGCTACATAAAATATTTCATGCTTATACATAATATTTTT
ATTTTACATTCAATTGGTGGTGGATAACTAAGATGATTTTATCGCTGGCT
ATTGTGAATAAAATGGCAATGAACATGAATGTACAAGTATCTTTTTGAAC
ACTGACTTAGAGAATATATGCAGCTGGATCATATAGCAGTTTTATTTTCA
GAATTTTTGTTTTAATTTCCATGATTGAAGTTTAAATTTCCACTAGCAGT
GAAGAAAAGTTTGCCATTTTCCTCATTTACTCCAACAGTTGTTATTTGTT
TTGTCAATCACAATAATTCTAACTAGAGTAGTTGGAA

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTTATCATGTTTGTTTGTTTGTTTGTTTGTT
TGTTTGTTTGTTGTTGTTGTTTCTGGTTGTTGTTTTTTAAGTACTTACCA
CCTTTTTCTAAGAATAAAGGGACTTTGGTCATAAAAAGCTGATTTGTGGG
ATAATCAAAAGAGACCATGAAGTAAATGATTGACTGAATTGATATGTTAA
AAAAAAAAAAAAAAGACCAGCATTAGCCCAAAAGAGAAATCTAGAAATCT
AGGCAGAGAGAACTGCTTGGAGAGTGAACACAACTCTTTTAGAATTTTCC
TAAAATGACTTGGGTCAGAGAACCTATGAGCTGTCCAAAGAACTCTTAAA
TTTCTTTTAGCCTGAGAAAACTGTCTTTAATGTAGAGCTCTCTCAAGTAG
GGAGCTGTCAACTAGCAATGAGTTGTTTCAAACAGACCAAAGTCAAAAGC
TATCTACAGAGAGATGTCCAGGAAGCCATCTCAAGCAGACTTCAAGGCTG
TTGGCTTGTATGCCATAATTAACTTCAAGTTGTTCTTTTTGCTCCCTGAA
ACACCCATTCCTCAAGACTCCCAACCAAGCCAAGGCTGGTCCTTGGCAGA
TATAATCATGCTTAGGCAGTAAAGGAGTTCCAGGTTCAGCAAGCAGCAAA
ACTCAGAAGCCATGTGGCTCTGGCTTTAGTCAAGAATAA

Query= MSMg01no517_h02.b1 MSMg01no517_h02.b1 CHROMAT_FILE:
MSMg01no517_h02.b1 PHD_FILE: MSMg01no517_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:32 2005
         (690 letters)



>mm_chr6_62433306_62434395
          Length = 1090

 Score = 1230 bits (636), Expect = 0.0
 Identities = 673/686 (98%), Gaps = 2/686 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaggaactagtagaaaatattaattatatggctatacagatgacactgttca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaggaactagtagaaaatattaattatatggctatacagatgacactgttca 264

                                                                       
Query: 65  aaaactgtggaacagaaataaaaagtcatgaatgtgtgaaagagatgagtaagaaaaggg 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacctgtggaacagaaataaaaagtcatgaatgtgtgaaagagatgagtaagaaaaggg 324

                                                                       
Query: 125 agcatacagtagagggaatggtagggataagaaatggttggaaatggagccaccatagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcatacagtagagggaatggtagggataagaaatggttggaaatggagccaccatagtg 384

                                                                       
Query: 185 cagtacatacatgcacaatatcatcaaagaacaaatttaattaatatgcatttacatata 244
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 cagtacatacatgtacaatatcatcaaagaataaatttaattaatatgcatttacatata 444

                                                                       
Query: 245 attttacatatagcatccatattttatagaaaatatgacatttgttcaagtcttgtttac 304
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attttacatacagcatccatattttatagaaaatatgacatttgttcaagtcttgtttac 504

                                                                       
Query: 305 tctctgaaacatggtaaactccagttaaatgagttttctggtaaatgttgcattttaatt 364
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctctgaaac--ggtaaactccagttaaatgagttttctggtaaatgttgcattttaatt 562

                                                                       
Query: 365 ttccttacagctacataaaatatttcatgcttatacataatatttttattttacattcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttccttacagctacataaaatatttcatgcttatacataatatttttattttacattcaa 622

                                                                       
Query: 425 ttggtggtggataactaagatgattttatcgctggctattgtgaataaaatggcaatgaa 484
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 623 ttggtggtggataactaagatgattttatcactggctattgtgaataaaatggcaatgaa 682

                                                                       
Query: 485 catgaatgtacaagtatctttttgaacactgacttagagaatatatgcagctggatcata 544
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 683 catgaatgtacaagtatctttttgaacactgacttagagaatatgtgcagatggatcata 742

                                                                       
Query: 545 tagcagttttattttcagaatttttgttttaatttccatgattgaagtttaaatttccac 604
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct: 743 tagcagttttattttcagaatttttgttttaattttcatgattgaagtttaaacttccat 802

                                                                       
Query: 605 tagcagtgaagaaaagtttgccattttcctcatttactccaacagttgttatttgttttg 664
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 803 tagcagtgaagaaaagtttgccatttgcctcatttactccaacagttgttatttgttttg 862

                                     
Query: 665 tcaatcacaataattctaactagagt 690
           ||||||||||||||||||||||||||
Sbjct: 863 tcaatcacaataattctaactagagt 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)