XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACA
TACCCTGCAAGAAACAAGCCAGGAGACCACAAGACCGAGAGACAAAGAAA
CTTTATAGCCAAAATGGTTGAGGTTACACAGGACTCAAAGGATCTGGGGA
TTAGTAAAAGTAAGTTCAGAGGCTGGGGATATTAAAGGTAGATGGCAGGG
TATGCCAGCCAGGATGGCTCTGTAATAGGAACCCTACATCTGAGTGTGGA
CTGAGGAAGATTGGTAGCTAGAATTAAGTAATACACCATTTGTCTCAGTT
TTTTGAGACCTAATGTGTTTTTGTATATGTGCATGCATGTATATAGATAT
GCTGTAGTTCTTAATAAAATACAACACATTTAAGTCAGTGACCCACAGAA
TGTAGTGATCTAGAGAAAATAACAGTTATGCAACAATGAAGAAACAAATT
ATTATTACCACTTTTATGTGACATATCAAAAATTTTGTTCATGAATTTGA
TGTTAGGTATAAGGTCTGCAATGCTTCAGGCCACTTAGCTTCCTAAACAT
GCATTTCTTTAGAAACATGCTGTGATGGTTTGTATATTCTTGGACCAGGG
AGTGGCACCATTTGGAGGTGTGGCCTTGTCAGAATAGGTGTGAACTGGTT
GGAGTAGGTGTGTCACTGTGGGTGTGGGATGAAGATGTTTGGATGTTTGG
GATGAAAATGTANAACTCTCAGCTCTGCCTGTGCCATGCCTGCCTGAATA
CTGCCATACTCCCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTATGGAATACCGAATGGCAGAGAAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AAAACTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGAAGATGCTGGCGAGGATGTCGAGAAAGAGGAACACTCCTC
AATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTG
GTGGTTCCTTAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATAC
CTCTCCTGTGCATATATCCAGAAGATGTCCCAACCAGTAAGTAGGACACA
TGCTCCACTATGTTTATAGCAGCCTTATTTATAGTAGCCAGAAGCTGGAA
AGAACCCAGATGCCCTCAACAAAGGAATGGATACAGAAAATGTGATACAT
TTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA
GCCCAAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAACTCAT
GAAATTCAAGAAGAATGAAGACCAAAGTGGGGACACTGTGCCCCTTCTT

Query= MSMg01no517_j12.b1 MSMg01no517_j12.b1 CHROMAT_FILE:
MSMg01no517_j12.b1 PHD_FILE: MSMg01no517_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:44 2005
         (644 letters)



>mm_chr6_110191859_110192902
          Length = 1044

 Score = 1108 bits (573), Expect = 0.0
 Identities = 626/645 (97%), Gaps = 7/645 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacataccctgcaagaaacaagccaggagaccacaagaccgagagacaaagaaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacataccctacaagaaacaagccaggagaccacaagaccgagagacaaagaaa 264

                                                                       
Query: 65  ctttatagccaaaatggttgaggttacacaggactcaaaggatctggggattagtaaaag 124
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 ttttatagccaaaatggttgaggttacataggactcaaaggatctggggattagtaaaag 324

                                                                       
Query: 125 taagttcagaggctggggatattaaaggtagatggcagggtatgccagccaggatggctc 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagttcagaggctggggagattaaaggtagatggcagggtatgccagccaggatggctc 384

                                                                       
Query: 185 tgtaataggaaccctacatctgagtgtggactgaggaagattggtagctagaattaagta 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 tgtaataggaaccctacatctgagtggggactgaggaagattggtagctagaattaagta 444

                                                                       
Query: 245 ataca-ccatttgtctcagttttttgagacctaatgtgtttttgtatatgtgcatgcatg 303
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ata-agccatttgtctcagttttttgagacctaatgtgtttttgtatatgtgcatgcatg 503

                                                                       
Query: 304 tatatagatatgctgtagttcttaataaaatacaacacatttaagtcagtgacccacaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatatagatatgctgtagttcttaataaaatacaacacatttaagtcagtgacccacaga 563

                                                                       
Query: 364 atgtagtgatctagagaaaataacagttatgcaacaatgaagaaacaaattattattacc 423
           ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 564 atgtagtgacctagagaaaataagagttatgcaacaatgaagaaacaaattcttattacc 623

                                                                       
Query: 424 acttttatgtgacatatcaaaaattttgttcatgaatttgatgttaggtataaggtctgc 483
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 624 acttttatatgacatatcaaaaattttgttcatgaatttgatgttaggtataaggtctac 683

                                                                       
Query: 484 aatgcttcaggccacttagcttcctaaacatgcatttctttagaaacatgctgtgatggt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatgcttcaggccacttagcttcctaaacatgcatttctttagaaacatgctgtgatggt 743

                                                                       
Query: 544 ttgtatattcttggaccagggagtggcaccatttggaggtgtggccttgtcagaataggt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttgtatattcttggaccagggagtggcaccatttggaggtgtggccttgtcagaataggt 803

                                                        
Query: 604 gtgaactggttgg--a--gtaggtgtgtcactgtgggtgtgggat 644
           ||||||||||| |  |  || ||| ||||||||||||||||||||
Sbjct: 804 gtgaactggtttgtcactgt-ggtatgtcactgtgggtgtgggat 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)