Query= MSMg01no517_l15.b1 MSMg01no517_l15.b1 CHROMAT_FILE:
MSMg01no517_l15.b1 PHD_FILE: MSMg01no517_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:54 2005
(651 letters)
>mm_chr6_51860786_51861843
Length = 1058
Score = 1183 bits (612), Expect = 0.0
Identities = 641/654 (98%), Gaps = 7/654 (1%)
Strand = Plus / Minus
Query: 5 gaattcc-atcatggcttctctggttctcctctttgtaaacagaagataaatatgtggcc 63
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaattccaatcatggcttctctggttctcctctttgtaaacagaagataaatatgtggcc 799
Query: 64 tggcatgttttggggaggggctgtataaagtggctttgctggtatgagttgaggtcacat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tggcatgttttggggaggggctgtataaagtggctttgctggtatgagttgaggtcacat 739
Query: 124 gattttggtaccttattcttgagtatgctagtatgggaagcacacttgctctgccccagc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gattttggtaccttattcttgagtatgctagtatgggaagcacacttgctctgccccagc 679
Query: 184 tcttctctgtgctactgactttatatccctagtaggactccctccttatgcatgtcagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcttctctgtgctactgactttatatccctagtaggactccctccttatgcatgtcagca 619
Query: 244 tctctcatgttacaaggatgagagttttagagtcaaattagagttaagctagaggtagag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tctctcatgttacaaggatgagagttttagagtcaaattagagttaagctagaggtagag 559
Query: 304 tcaagtttgtaactggagtgagtagagattgaaccatccagatctagcctttaaaatctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tcaagtttgtaactggagtgagtagagattgaaccatccagatctagcctttaaaatctt 499
Query: 364 gtttctctggagtgagttgaaagaaaatccttcaaaatttctttggaccactttagtgtt 423
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 498 gtttctctggagtgagttgaaagaaaatccttcaaattttctttggaccactttagtgtt 439
Query: 424 ttgccttctattattttctttcc------tttttttttttgtagtggaagttaaattcct 477
||||||||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct: 438 ttgccttctattattttctttcctttttttttttttttttgtagtggaagttaattttct 379
Query: 478 cttacagtgcaagtggactgttgactggtgtttgtagaacacctacatttgtaatgcata 537
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 378 cttacagtgcaagtggattgttgactggtgtttgtagaatacctacatttgtaatgcata 319
Query: 538 tatttttatatcagtgagaaagatctgataatgtgtgctattaataacttttgtcttaac 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tatttttatatcagtgagaaagatctgataatgtgtgctattaataacttttgtcttaac 259
Query: 598 atacttataatactaccaggcatattgaaagtgtttaatataaatttgttgaat 651
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 258 atacttataatactaccaggcatactgaaagtgtttaatataaatttgttgaat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1058
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1048
Effective search space: 671768
Effective search space used: 671768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_l15.g1 MSMg01no517_l15.g1 CHROMAT_FILE:
MSMg01no517_l15.g1 PHD_FILE: MSMg01no517_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:55 2005
(526 letters)
>mm_chr6_51709535_51710460
Length = 926
Score = 917 bits (474), Expect = 0.0
Identities = 515/532 (96%), Gaps = 9/532 (1%)
Strand = Plus / Plus
Query: 1 agaggagtttgtaatgtatcataggctcttgcttctcagtgtacgggtcatgcagcccgt 60
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 201 agaggagtttgtaatgtatcataggctcttgcttctcagagtatgggtcatgcagcccgc 260
Query: 61 caggaggtagaaaaatataaatgaaaccttctccatttcccctcttgatggtaagcaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggaggtagaaaaatataaatgaaaccttctccatttcccctcttgatggtaagcaact 320
Query: 121 agaaatgatttttgagaagttctg-aagaaggcacttcccatctcagtggatcaatggct 179
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 321 agaaatgatttttgagaagttctggaa-aaggcacttcccatctcagtggatcaatggct 379
Query: 180 tgtccctgaagtccctgtggtgagtgtaatgtgacactaagaccatcctagatcacatca 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 380 tgtccctgaagtccctgtggtgagtgtaatttgacactaagaccatcctagatcacatca 439
Query: 240 caggcctcttcccaaagattgggggctaagggtagagaagggacgttccataaagaaaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 caggcctcttcccaaagattgggggctaagggtagagaagggacgttccataaaggaaat 499
Query: 300 ccaaacacaggattagagatggagaaatggctgccaggtggcccaaccagccattggtca 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 500 ccaaacacaggattagagatggagaaatggctgccaggtggccccaccagccattggtca 559
Query: 360 catggaaaggaaggagcagatggcagcagttccaggagaacttgagagtgaacaaggtgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 catggaaaggaaggagcagatggcagcagttccaggagaacttgagagtgaacaaggtgt 619
Query: 420 gagagagcatcagtcatttcatcttgacttttagtttttttgctttgttttgttttgttt 479
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 620 gagagggcatcagtcatttcatcttggcttttagtttttttgctttgttttgttttgttt 679
Query: 480 tgttttgttttgttttgttttg-----ttttggtttggtnnttggtttggtt 526
|||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 680 tgttttgttttgttttgttttggtttgttttggtttggt--ttggtttggtt 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
