BAC Information

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BAC

Clone NameMSMg01-518B04
Chromosome6 (Build37)
Map Location 30,766,079 - 30,766,656
singlet/doubletsinglet
Overlap geneCopg2
Upstream gene4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2
Downstream geneTsga13, Klf14, LOC100038973, AB041803, Mkln1, Podxl, EG619959, LOC620104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518B04.T7 (MSMg01no518_b04.b1)MSMg01-518B04.TJ (MSMg01no518_b04.g1)
ACCAG589668AG589669
length807773
length of high quality
(start - end)		---582 (77 - 658)
definitionCHROMAT_FILE: MSMg01no518_b04.b1 PHD_FILE: MSMg01no518_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:22 2005CHROMAT_FILE: MSMg01no518_b04.g1 PHD_FILE: MSMg01no518_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATAAAAGCCGGGGGCGGCNCTCNCTATTCCNANAAAATCCNCGAAATT
CCAAGCTCACGGTCGNCTCAAGGACTGCCTAGGACATTGNTTGAAAGCCA
GAAANNCAAGTTCAATTTANCTTAAGTATTTGACAAATCAATTGCTTGGA
NGCACCCTATAATTAAACCATACTTGAAAAAAANCACACAAATTCTATTC
CCTGACTAAACCCAGGGACTTGTTTGGAAATATTCTTGCTAAAGGATGCC
CAAGTTTCCAAAAACTAAATTTTCCGGGAAAACTTTTTCCCTGGGAAATG
GGTCCAACCTTTTTGGCCCCGCCCCAAAATTTTATACGGGAAGGGGGGGG
CCCCCTCCGGGCCCCCAATTAAACCGGGGGAACCCCCCCCCCCCAAGGGT
GGGGGAAATAAACCCCGGACTCCCCTTTGGGGGGCCCCCCCTTCTGGAAA
ATTAAAAAAAAGGCCTCCTTTTTGGAAAAAAAAAAAAACCCCCCCAAAAN
GCTCTTTTTTGATATAAATTTGTTTTTNTTTTTCCCCAAAAAAACCCCCT
TTTTTTTTCCCCTCTCTCTCCCCTNNTNGCCCCTTTTTATACTTTTTGGG
GGGGGGGGGTTTTTTGAAAAACCAAACAAAAAAAAAAAATCTCCCTCTTT
TTCCTTTTTTTTTNAAAAAAAAAAAACTTTATTTTTTTTTCTTCTTTAAA
AAAAAAAAAAAAAAATAATATTTTTTTTCTTCTTTTTTTTTTCCCCCCCC
CCCCCCCCCCCCTCCCCCAATATAAATAATATAACCGCGGTGCCGCGGGG
GGCGGTG

TTCAATGCTGGGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGGTGGGCTAGACCAGCTTC
TTTACTCTCAGGGTTCTCTTCCACAATGCTGATTATGCAGTCCACAATGG
CCTTTTTGTATTCAAAACCTCCCTGAGAAAAGAGAAGATAAAACTGCTAT
TTGTTCTAAAGACTTTTTTTTTTTTTTTTTTTAAATCTAACCACCACCCA
CCACCAATGGTGTTCCCATTTTAAGGAACTTTTTAGAATTTTATTTTAAA
GAAATGCTTATATTTTAAGATTCATGCTTATAATATTAAAATTTCAACTA
ACTTTATTTAATATAACAATAAAAACAAAGTTGTTCCCCTTCAAGTGGGA
AAATAATTAGCTGTAATAAATACAGCAGTTGGAATTCTGTATATGTTTGC
ATGGTATACAGAAATGAGAAAGAAATATATTTAACACATGATAAAGAAAT
ATGCTTAAAATACTAATGGGAGGTCCTGGGTTGAGTTGGAGAGCCTCCAG
GGGCAGGAAAGGGGTGGACATTATTAAGATACATTGAATATATGCATTAC
AACATCAAAGAAAAAAATAATGATACAAACCATGAAGAAGTGAGTTAAAA
ACAATAACAACAAAAACACTGTGGTGGTATTTAACAGCAATCGAGGGAAT
TTAAGAGAACAACTTCCTATGTTAAAACGTAGACTACTACCTACATCATC
TCGAAGCATGTTGGAAAGAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_b04.g1 MSMg01no518_b04.g1 CHROMAT_FILE:
MSMg01no518_b04.g1 PHD_FILE: MSMg01no518_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:22 2005
         (582 letters)



>mm_chr6_30765879_30766860
          Length = 982

 Score = 1098 bits (568), Expect = 0.0
 Identities = 577/582 (99%), Gaps = 4/582 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaggtgggctagaccagcttctttactctcagggttctcttccacaatgctgattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaggtgggctagaccagcttctttactctcagggttctcttccacaatgctgattat 260

                                                                       
Query: 61  gcagtccacaatggcctttttgtattcaaaacctccctgagaaaagagaagataaaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagtccacaatggcctttttgtattcaaaacctccctgagaaaagagaagataaaactg 320

                                                                       
Query: 121 ctatttgttctaaagactttttttttttttttttttaaatctaaccaccacccaccacca 180
           |||||||||||||||||    |||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ctatttgttctaaagac----ttttttttttttttaaaatctaaccaccacccaccacca 376

                                                                       
Query: 181 atggtgttcccattttaaggaactttttagaattttattttaaagaaatgcttatatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atggtgttcccattttaaggaactttttagaattttattttaaagaaatgcttatatttt 436

                                                                       
Query: 241 aagattcatgcttataatattaaaatttcaactaactttatttaatataacaataaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aagattcatgcttataatattaaaatttcaactaactttatttaatataacaataaaaac 496

                                                                       
Query: 301 aaagttgttccccttcaagtgggaaaataattagctgtaataaatacagcagttggaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaagttgttccccttcaagtgggaaaataattagctgtaataaatacagcagttggaatt 556

                                                                       
Query: 361 ctgtatatgtttgcatggtatacagaaatgagaaagaaatatatttaacacatgataaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctgtatatgtttgcatggtatacagaaatgagaaagaaatatatttaacacatgataaag 616

                                                                       
Query: 421 aaatatgcttaaaatactaatgggaggtcctgggttgagttggagagcctccaggggcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaatatgcttaaaatactaatgggaggtcctgggttgagttggagagcctccaggggcag 676

                                                                       
Query: 481 gaaaggggtggacattattaagatacattgaatatatgcattacaacatcaaagaaaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaaaggggtggacattattaagatacattgaatatatgcattacaacatcaaagaaaaaa 736

                                                     
Query: 541 ataatgatacaaaccatgaagaagtgagttaaaaacaataac 582
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ataatgatacaaaccatgaagaagtgagttaaaaacaataac 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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