Query= MSMg01no518_h03.b1 MSMg01no518_h03.b1 CHROMAT_FILE:
MSMg01no518_h03.b1 PHD_FILE: MSMg01no518_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:51 2005
(189 letters)
>mm_chr6_32937115_32937703
Length = 589
Score = 317 bits (164), Expect = 2e-91
Identities = 179/186 (96%), Gaps = 6/186 (3%)
Strand = Plus / Minus
Query: 5 gaattcc-atagattctttttatttttctaatctgcttttagaaaa--tggaaaattgca 61
||||||| |||||||||||||||||||||||||| ||||||| | ||||||||||||
Sbjct: 387 gaattccaatagattctttttatttttctaatcttcttttag---atgtggaaaattgca 331
Query: 62 tgtgtagtttgcattttattcctattagtactacccttatatgttgaacttaaaatgcaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgtgtagtttgcattttattcctattagtactacccttatatgttgaacttaaaatgcaa 271
Query: 122 gttaatttcataaaaataataccacagaaacaaaatagcttttgtgtagtacctctttct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gttaatttcataaaaataataccacagaaacaaaatagcttttgtgtagtacctctttct 211
Query: 182 atttcc 187
||||||
Sbjct: 210 atttcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space: 105161
Effective search space used: 105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no518_h03.g1 MSMg01no518_h03.g1 CHROMAT_FILE:
MSMg01no518_h03.g1 PHD_FILE: MSMg01no518_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:51 2005
(612 letters)
>mm_chr6_32756524_32757535
Length = 1012
Score = 1122 bits (580), Expect = 0.0
Identities = 605/614 (98%), Gaps = 2/614 (0%)
Strand = Plus / Plus
Query: 1 caagatatttaggtgagaaaatgaaatcttagttgaaaaggacatttaaacaattgaatt 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 199 caagatatttaggtgagaaaatgctatcttagttgaaaaggacatttaaacaattgaatt 258
Query: 61 ttactggatttaagaaagattgaatgaaaggatgaatgacaagataaagagcaagttgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttactggatttaagaaagattgaatgaaaggatgaatgacaagataaagagcaagttgag 318
Query: 121 cacagagctggaaaacacaggacagtgataatggagaccattatccaaaaccagttgagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cacagagctggaaaacacaggacagtgataatggagaccattatccaaaaccagttgagc 378
Query: 181 cagaaggaactgttagaacaaagtcaacctctgaaaatagacatttataaaaaacaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagaaggaactgttagaacaaagtcaacctctgaaaatagacatttataaaaaacaataa 438
Query: 241 caaaacattttttttttt--ggcttatggaaatcattgggaacttttcactgaattcacc 298
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caaaacatttttttttttttggcttatggaaatcattgggaacttttcactgaattcacc 498
Query: 299 cgctttttctacttcttttaattttttttccttgtttgtttgctttgagagagggtctct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cgctttttctacttcttttaattttttttccttgtttgtttgctttgagagagggtctct 558
Query: 359 caggttgttctgaaactcacttatgcagaccattctggcagacatccaactgcttgtctc 418
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 559 caggttgttctgaaactcacttatgcagaccattctgacagacatccaactgcttgtctc 618
Query: 419 ttgagtgctggaattaaagacatgagccactatacctggccatcttgtttacccttcagt 478
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttgagtgctggaattaaagtcatgagccactatacctggccatcttgtttacccttcagt 678
Query: 479 ccttcctttcccaagcacaagctgctcctcaagcgacctccagccctatccataacctta 538
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 679 ccttcctttcccaagcacaagctgctcctcaagtgacctccagccccatccataacctta 738
Query: 539 gtgcatggccaaggggctgggggcgggacacagcataaccttagtgcatggccaaggggc 598
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gagcatggccaaggggctgggggcgggacacagcataaccttagtgcatggccaaggggc 798
Query: 599 tgggggcgggacac 612
||||||||||||||
Sbjct: 799 tgggggcgggacac 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
