BAC Information

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BAC

Clone NameMSMg01-518J01
Chromosome6 (Build37)
Map Location 29,874,149 - 30,024,474
singlet/doubletdoublet
Overlap geneD330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
Upstream geneLOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik
Downstream geneUbe2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518J01.T7 (MSMg01no518_j01.b1)MSMg01-518J01.TJ (MSMg01no518_j01.g1)
ACCAG590044AG590045
length745744
length of high quality
(start - end)
682 (52 - 733)563 (84 - 646)
definitionCHROMAT_FILE: MSMg01no518_j01.b1 PHD_FILE: MSMg01no518_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:00 2005CHROMAT_FILE: MSMg01no518_j01.g1 PHD_FILE: MSMg01no518_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,023,915 - 30,024,474)(29,874,149 - 29,874,711)
sequence
CCCATTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTATTTGTCGAATAAGTGAGTTTTTAAAAAGTGGTTTG
CTAACCTAAGATTTTAAGTACATACCCAATAATTTCCTTGACTTTTGAAC
GATGTTACAACGTTGCACATACAGTTATGGGGTGTTGAACACACAGTTAA
AACAAGCACAGAAAGTTCATACAGTAAAACAGCAAAGATCAGCACAGATG
GTGGTCAGAGGACAGAATTAAATGATCATTTTTGCAGATACACAGGAGGC
TAAGGCAAAAGGATTGCTTAAGTCCAAGAGTTCAAGAGCAGCCTGGGCCA
CATAGCATGGCTGTGTCTCAGAAGAGGAGGTACTACTATCCTCAAAGAGG
AAAGGATAACAGCATTTATAACTCCATTTTCCAAAATGGCAAGACAAGAC
ATCCTGCCCAGCTCTGATTCCTAAAACAACCTAAGTGGCCTGGGGATAGC
ATTTAGCAGAGTGCTTACCTTGCAAGCAAGGTGCCTTAAACGGAAGCGCC
AGTACTAAACTGTAATAGTAAGGATAAATATAAGCTAGCTGGGCTCAGTG
CTGCACACATAATCTCACACACAGATGCAGTAGGATCCATTACTGAGTTC
CAGGTCAGCCTTAGCAACACTTTAAGTTAAGGGCACTCTGAGCATACCTC
AAAAACAAACAAAAACGGACCATGTGATATATAGCGCAGAGGTAG
TTTTTTTTCTTTTTTTTGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTACAGGGAAGATG
CAACCAAGAGAAGCAGAGGGATGGCTCAGCAAGGCTGAACACTTTAGTCC
CTTCTGCCCGGTGGAATCCTGGGCCTAGCCTAGTCCTTAATGTTTAGCTT
CTGTCTGTAGCTCTGCCCCACCACCAGTACCAGCTTTATATTCCCTGACT
GTGACCCCTTCAGATGCTTCACTACTTTCTCAGTGGCAATTTAATTTTTA
ATTCAACAAATGTCTGCTGAGTATCTGTTGTGTCAGAGATGCAGGAGGCA
GAGGTGGAAGTAATTTGCAGCTTCCACAAATAAGTTGTATAGTCTGGGGA
GCTATGCATGTCACAAAAGAAGCCAAGGCCAGGGGAAACTAGGAAATGTC
ACAGTAAAGCAAGAGTGTTAGGGGCAGAGCTTTTGGTTTGGGCTCGAGTG
TGGAAGAGGGCCTCTTGTATCAGGCATGGAAGGATGACTAGGGGTCGGAT
GTGAATGGAGACAGAGGGACACCTTGAGGAAAGGCAGAGAACAGAATATG
CTGTGTGAATAAAAGTGGGAATGGTAAATATATGGGTACAGAGTAGGTTC
AGATGAGGATATTTTGGGTCCTTTTGTTTTCTTAGCTTAATAAGGAAAGC
TTGAGTGAGAGGTATGGCTTAGTGATAGCGCTTGCCTAGCATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_j01.b1 MSMg01no518_j01.b1 CHROMAT_FILE:
MSMg01no518_j01.b1 PHD_FILE: MSMg01no518_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:00 2005
         (682 letters)



>mm_chr6_30023393_30024474
          Length = 1082

 Score = 1029 bits (532), Expect = 0.0
 Identities = 553/560 (98%)
 Strand = Plus / Minus

                                                                        
Query: 123  gttatggggtgttgaacacacagttaaaacaagcacagaaagttcatacagtaaaacagc 182
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 gttatggggtattgaacacacagttaaaacaagcacagaaagttcatacagtaaaacagc 1023

                                                                        
Query: 183  aaagatcagcacagatggtggtcagaggacagaattaaatgatcatttttgcagatacac 242
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 aaagatcagcacagatggtgatcagaggacagaattaaatgatcatttttgcagatacac 963

                                                                        
Query: 243  aggaggctaaggcaaaaggattgcttaagtccaagagttcaagagcagcctgggccacat 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962  aggaggctaaggcaaaaggattgcttaagtccaagagttcaagagcagcctgggccacat 903

                                                                        
Query: 303  agcatggctgtgtctcagaagaggaggtactactatcctcaaagaggaaaggataacagc 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902  agcatggctgtgtctcagaagaggaggtactactatcctcaaagaggaaaggataacagc 843

                                                                        
Query: 363  atttataactccattttccaaaatggcaagacaagacatcctgcccagctctgattccta 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  atttataactccattttccaaaatggcaagacaagacatcctgcccagctctgattccta 783

                                                                        
Query: 423  aaacaacctaagtggcctggggatagcatttagcagagtgcttaccttgcaagcaaggtg 482
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 782  aaacaacctaagtggcctggggatagcatgtagcagagtgcttaccttgcaagcaaggtg 723

                                                                        
Query: 483  ccttaaacggaagcgccagtactaaactgtaatagtaaggataaatataagctagctggg 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  ccttaaacggaagcgccagtactaaactgtaatagtaaggataaatataagctagctggg 663

                                                                        
Query: 543  ctcagtgctgcacacataatctcacacacagatgcagtaggatccattactgagttccag 602
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 662  ctcagtgctgcacacataatctcacacacagatacagtaggatccattactgagttccag 603

                                                                        
Query: 603  gtcagccttagcaacactttaagttaagggcactctgagcatacctcaaaaacaaacaaa 662
            ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  gtcggccttagcaacacattaagttaagggcactctgagcatacctcaaaaacaaacaaa 543

                                
Query: 663  aacggaccatgtgatatata 682
            ||||||||| ||||||||||
Sbjct: 542  aacggaccaggtgatatata 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no518_j01.g1 MSMg01no518_j01.g1 CHROMAT_FILE:
MSMg01no518_j01.g1 PHD_FILE: MSMg01no518_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:00 2005
         (563 letters)



>mm_chr6_29873949_29874911
          Length = 963

 Score = 1081 bits (559), Expect = 0.0
 Identities = 562/563 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctacagggaagatgcaaccaagagaagcagagggatggctcagcaaggctgaacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctacagggaagatgcaaccaagagaagcagagggatggctcagcaaggctgaacact 260

                                                                       
Query: 61  ttagtcccttctgcccggtggaatcctgggcctagcctagtccttaatgtttagcttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagtcccttctgcccggtggaatcctgggcctagcctagtccttaatgtttagcttctg 320

                                                                       
Query: 121 tctgtagctctgccccaccaccagtaccagctttatattccctgactgtgaccccttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtagctctgccccaccaccagtaccagctttatattccctgactgtgaccccttcag 380

                                                                       
Query: 181 atgcttcactactttctcagtggcaatttaatttttaattcaacaaatgtctgctgagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcttcactactttctcagtggcaatttaatttttaattcaacaaatgtctgctgagta 440

                                                                       
Query: 241 tctgttgtgtcagagatgcaggaggcagaggtggaagtaatttgcagcttccacaaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgttgtgtcagagatgcaggaggcagaggtggaagtaatttgcagcttccacaaataa 500

                                                                       
Query: 301 gttgtatagtctggggagctatgcatgtcacaaaagaagccaaggccaggggaaactagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgtatagtctggggagctatgcatgtcacaaaagaagccaaggccaggggaaactagg 560

                                                                       
Query: 361 aaatgtcacagtaaagcaagagtgttaggggcagagcttttggtttgggctcgagtgtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatgtcacagtaaagcaagagtgttaggggcagagcttttggtttgggctcgagtgtgg 620

                                                                       
Query: 421 aagagggcctcttgtatcaggcatggaaggatgactaggggtcggatgtgaatggagaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagagggcctcttgtatcaggcatggaaggatgactaggggtcggatgtgaatggagaca 680

                                                                       
Query: 481 gagggacaccttgaggaaaggcagagaacagaatatgctgtgtgaataaaagtgggaatg 540
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 gagggacaccttgaggaaaggcagggaacagaatatgctgtgtgaataaaagtgggaatg 740

                                  
Query: 541 gtaaatatatgggtacagagtag 563
           |||||||||||||||||||||||
Sbjct: 741 gtaaatatatgggtacagagtag 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)