BAC Information

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BAC

Clone NameMSMg01-518O11
Chromosome6 (Build37)
Map Location 110,454,803 - 110,455,161
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518O11.T7 (MSMg01no518_o11.b1)MSMg01-518O11.TJ (MSMg01no518_o11.g1)
ACCAG590302AG590303
length753755
length of high quality
(start - end)		682 (66 - 747)679 (77 - 755)
definitionCHROMAT_FILE: MSMg01no518_o11.b1 PHD_FILE: MSMg01no518_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:27 2005CHROMAT_FILE: MSMg01no518_o11.g1 PHD_FILE: MSMg01no518_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACGTGACATCCCTGGGTTATACGTGGAAGAGTCAAAAGTACTT
ACACTATTTACTCTGTTGTCACGTGAAGCCTCCCACCATGACACAACACA
TAAAAATATATGATATGTCAGCTTCTTTATATTTAATTTCCCAAGTTCCA
AAACTACAAACAATGTATTTTTTTAATTAATAGTTGTTTTTATTAGATGT
TTTCTTTCTCTGCATTTCAAATGTTTTTCATTTTCCTGGTTTCCCCTCTG
AAATCCCCTGTCCTTTCCCCCATCCCCCTGCTCACCAACCCACTCACTCC
TGCTTCCTCTATACTGGGGCATAGAACCTTCACAAGACCAAGGACCTCTC
CTCCCATTGATGACTGACTAGGCCACTCTCTGCTACATATGCATAGAGCC
ATGAGTTCTACCACGTGTTTTCTTTGGTTGGTCATTTAGTCCCATGAAGC
TCTGGGGGTTCTGGTTAGTTCATATTGTTGTTCCTCCTATGGGGATGCAA
ACCCCTTCAGCTCCTTGGGTACTTCCTCTAGCTCATACTTCAATCCTTCT
TTCAAGGGGGAACAGATAACCATGGAAGGAGTTACAGAGACAAGTGTGTA
GCAGAGACTGAAGGAATGACCATCCATAGACTTTCCCACCTGGGGATCCA
TCCCATATACAACCAACAAACCATACACTCTTGCAGATGCCAACAAGAGC
TTG

AGGCAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAGCTACTACTGAACCATTGTTG
GGAAATGGGCTGCAGACTGTAAGTCATCAATAAATTCCTTTTATATAGAG
ACTATCCATAAGTTCTGTGACTCTAGAGAACCCTGACTAATACAGTTATA
AACATAGCAACTCTTATAAATAAAAGCATTTAATTGGGGCTGCCTTACAG
TTTCAGTGGTTTAGTCCCTTAGCATGATGAGAAGTAAAGCAGTATGTGGG
TACACATGGGGTCACAGAAGTGGTTGACAGTTCTACATACAGATACACAG
ACAGCAAGAAGAGACAGACAGACAGACAGACAGACACACAGAGAGAAAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTGGCTTGGGCCTT
TGAAACATCAGTGCCCACCACTCAGTGTCATATTTCCTCCAACAAGGCAC
CATTATCTAATCTAGTCCAAGTGAAGCCTTAATTACTAGGCATTCAAACA
TATGAACCTATGAAATCCATTCTTGTTGAACCCCCCAAACACATACACAC
ACATTTGCCATTTTTCAATAATCCACTTGTGATAGTTTGTATATACTTGG
CCCAGGGAGTGGCACTATTAGGAGGTATGGCCTTGTTTGAATAGGTGTAC
CTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_o11.b1 MSMg01no518_o11.b1 CHROMAT_FILE:
MSMg01no518_o11.b1 PHD_FILE: MSMg01no518_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:27 2005
         (682 letters)



>mm_chr6_110454803_110455884
          Length = 1082

 Score =  656 bits (339), Expect = 0.0
 Identities = 353/359 (98%), Gaps = 3/359 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   tgggttatacgtggaagagtcaaaagtacttacactatttactctgttgtcacgtgaagc 64
           ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 359 tgggttataggtggaagagtcaaaagtacttacactatttactcttttgtcacgtgcagc 300

                                                                       
Query: 65  ctcccaccatgacacaacacataaaaatatatgatatgtcagcttctttatatttaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctcccaccatgacacaacacataaaaatatatgatatgtcagcttctttatatttaattt 240

                                                                       
Query: 125 cccaagttccaaaactacaaacaatgtattttttt---aattaatagttgtttttattag 181
           |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 239 cccaagttccaaaactacaaacaatgtatttttttttcaattaatagttgtttttattag 180

                                                                       
Query: 182 atgttttctttctctgcatttcaaatgtttttcattttcctggtttcccctctgaaatcc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 atgttttctttctctgcatttcaaatgtttttcattttcctggtttcccctctgaaatcc 120

                                                                       
Query: 242 cctgtcctttcccccatccccctgctcaccaacccactcactcctgcttcctctatactg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cctgtcctttcccccatccccctgctcaccaacccactcactcctgcttcctctatactg 60

                                                                      
Query: 302 gggcatagaaccttcacaagaccaaggacctctcctcccattgatgactgactaggcca 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  gggcatagaaccttcacaagaccaaggacctctcctcccattgatgactgactaggcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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