BAC Information

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BAC

Clone NameMSMg01-519E12
Chromosome6 (Build37)
Map Location 24,745,835 - 24,746,464
singlet/doubletsinglet
Overlap geneSpam1
Upstream geneCadps2, Tas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4
Downstream geneHyal5, 6332401O19Rik, LOC384358, Gpr37, Pot1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519E12.T7 (MSMg01no519_e12.b1)MSMg01-519E12.TJ (MSMg01no519_e12.g1)
ACCAG590592AG590593
length736742
length of high quality
(start - end)
611 (37 - 647)630 (67 - 696)
definitionCHROMAT_FILE: MSMg01no519_e12.b1 PHD_FILE: MSMg01no519_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:57 2005CHROMAT_FILE: MSMg01no519_e12.g1 PHD_FILE: MSMg01no519_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTC
TATTTGTCAGTCTTCTAACTTTATTCAAGGCTTTAACTAATTGAATAGAA
CCTATCAACTCTGCAGATTGCAATATATGCTCCTCTTTCAGTAAATTTAA
GTGGAAAAACAGTTCACCAGCAGCCTGACTGAAATAGCTATAGTATTTAA
CTACTTATGTAAACATCCTGTTGTCAATCTAGTTGACACATAAAATTAAC
ATCATAAGTCTACCACTTGTCAACTTGATATTGATAAATATGTTCTTAAA
CTATAAAATACTAAAGAAATAAATGGAAGAAAATAATAGAAGATATAGCT
TCTATGTTCATAGTTTAGCAGGATTGGTGTTGTTAAAATGATCATACTTA
GCCAGGCAGTGGTGGCACACACCTTTAATCCCAGCACTTGGGAAGCAGAG
GCAAGAGGATTTCTGAGTTTGAGGCCAGCTGGGTCTACAGAGTGAGTTCC
AGAACAGCCAGGGATATACAGAGAAGCCCTTTCTTGACCCCCCCAAATCA
AAATAAAAAATCATACTATCAAAATAAGTGTATGGAGTCAATGTCACCTA
CAATGATATTTTTCACAGAATTAGGGAACGAAAATCCTAAAACTTAGATG
AAAATGTAAATGACCCTAAATAGTTAAAGCAAGCTTAATTAAAAAGAACA
ATAATGGAGGTATCACACAAGCCAATTTCAAACATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATATTTGTCTCTTTTCAGTTCTGGATGATTTAA
CTTGCTCCAAGATATTCCTGAAATGTAACACAGGAAGAAGAATCTTCAGT
GTAAATCAGTCACCATACATTCATCTCCCTCAGTAGCCTCATGCCACAGT
CTTTCTAATCTTTTGCATCAAATACTGGACAGACCACAGTGTGTAAGAAG
GAATAAGTGCCTACTTAGTAATTATTCTCTGTGATGGGAGAGTTGAGATT
TAAGCACCTCTTTTGGGGGAGCTTTCTTGAATCTGGGGGCACATTCCAAA
CAGTGTTAATCTTCCTTTTGATTCCATGCTCCTTGACTGTGGATTATAGG
GCAGCACCAATTTTATCAAATACAACTTTCCTTTGGATTTGGAATGTCCC
AACTGAACGTTGTGTAGGAAATGTTAATGATCCAATAGATCTGAGCTTCT
TCTCTTTAATTGGAAGCCCCCGGAAAACTGCCACAGGGCAACATGTCACA
TTATTTTATGTTGATCGACTTGGTTTGTATCCTCACATAGATGCAAACCA
AGCAGAACATTATGGAGGAATACCTCAGAGGGGCGATTATCAAGCTCATT
TGCGCAAAGCTAAGACTGACATAGAGCATTACATTCCAGACGACAAATTG
GGCTTAGCTATCATTGACTGGGAAGAATGGAGGCCTACCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_e12.g1 MSMg01no519_e12.g1 CHROMAT_FILE:
MSMg01no519_e12.g1 PHD_FILE: MSMg01no519_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:57 2005
         (630 letters)



>mm_chr6_24745635_24746664
          Length = 1030

 Score = 1203 bits (622), Expect = 0.0
 Identities = 628/630 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatttgtctcttttcagttctggatgatttaacttgctccaagatattcctgaaatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catatttgtctcttttcagttctggatgatttaacttgctccaagatattcctgaaatgt 260

                                                                       
Query: 61  aacacaggaagaagaatcttcagtgtaaatcagtcaccatacattcatctccctcagtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacaggaagaagaatcttcagtgtaaatcagtcaccatacattcatctccctcagtag 320

                                                                       
Query: 121 cctcatgccacagtctttctaatcttttgcatcaaatactggacagaccacagtgtgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcatgccacagtctttctaatcttttgcatcaaatactggacagaccacagtgtgtaa 380

                                                                       
Query: 181 gaaggaataagtgcctacttagtaattattctctgtgatgggagagttgagatttaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggaataagtgcctacttagtaattattctctgtgatgggagagttgagatttaagca 440

                                                                       
Query: 241 cctcttttgggggagctttcttgaatctgggggcacattccaaacagtgttaatcttcct 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcttttgggggagctttgttgaatctgggggcacattccaaacagtgttaatcttcct 500

                                                                       
Query: 301 tttgattccatgctccttgactgtggattatagggcagcaccaattttatcaaatacaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgattccatgctccttgactgtggattatagggcagcaccaattttatcaaatacaac 560

                                                                       
Query: 361 tttcctttggatttggaatgtcccaactgaacgttgtgtaggaaatgttaatgatccaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcctttggatttggaatgtcccaactgaacgttgtgtaggaaatgttaatgatccaat 620

                                                                       
Query: 421 agatctgagcttcttctctttaattggaagcccccggaaaactgccacagggcaacatgt 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 agatctgagcttcttctctttaattggaagcccccggaaaactgccacagggcaacctgt 680

                                                                       
Query: 481 cacattattttatgttgatcgacttggtttgtatcctcacatagatgcaaaccaagcaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacattattttatgttgatcgacttggtttgtatcctcacatagatgcaaaccaagcaga 740

                                                                       
Query: 541 acattatggaggaatacctcagaggggcgattatcaagctcatttgcgcaaagctaagac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acattatggaggaatacctcagaggggcgattatcaagctcatttgcgcaaagctaagac 800

                                         
Query: 601 tgacatagagcattacattccagacgacaa 630
           ||||||||||||||||||||||||||||||
Sbjct: 801 tgacatagagcattacattccagacgacaa 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)