Query= MSMg01no519_f21.b1 MSMg01no519_f21.b1 CHROMAT_FILE:
MSMg01no519_f21.b1 PHD_FILE: MSMg01no519_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:04 2005
(679 letters)
>mm_chr6_99088402_99089478
Length = 1077
Score = 1214 bits (628), Expect = 0.0
Identities = 664/676 (98%), Gaps = 3/676 (0%)
Strand = Plus / Minus
Query: 5 gaattccgggggtgaaaa-attgagtgtggaacatggcctacttcccatgggttgtgtgg 63
|||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 964 gaattcagggggagaaaacattgagtgtggaatatggcctacttcccatgggttgtctgg 905
Query: 64 gcctcagtttcgccatctgtaaaatgatgctctgagcatcttgtgcccctctgagaagtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 gcctcagtttcgccatctgtaaaatgatgctctgagcatcttgtgcccctctgagaagtg 845
Query: 124 gaacctaacatctgattggcgatgaagcacagtggatgcaggactctgaatggtgagccc 183
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gaacctaacatctgattggtgatgaagcacagtggatgcaggactctgaatggtgagccc 785
Query: 184 attgtgctgttccctgaatcactcacctctcccagactgagtagttttcctcaaggcctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 attgtgctgttccctgaatcactcacctctcccagactgagtagttttcctcaaggcctc 725
Query: 244 ttgtgtcccatggtaccgggggggtcttgatttcttgggacatcccttctcagaactagg 303
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 724 -tgtgtcccatggtacc-ggggggtcttgatttcttgggacatcctttctcagaactagg 667
Query: 304 gacccaatgaacaggagtttgaaagctcccaagctctagtgtctccaagtattggcttct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gacccaatgaacaggagtttgaaagctcccaagctctagtgtctccaagtattggcttct 607
Query: 364 gtgctcttctttctttgctgtagtagttacaagaaagcttgagtttgcttctgtgggcac 423
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 606 gtgctcatctttctttgctgtagtagttacaagaaagcctgagtttgcttctgtgggcac 547
Query: 424 agtgagtcatgatgggacaagtgctgaccatggaagctcgggcccactctcaagcacagg 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ggtgagtcatgatgggacaagtgctgaccatggaagctcgggcccactctcaagcacagg 487
Query: 484 aggctctaagatgcttgacaggaagggaaactgctaggactgtaacttatcaaaggcatg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aggctctaagatgcttgacaggaagggaaactgctaggactgtaacttatcaaaggcatg 427
Query: 544 tttgctgttggccttagtataataatgttaatgagattattaggtgggggagatttttga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tttgctgttggccttagtataataatgttaatgagattattaggtgggggagatttttga 367
Query: 604 taaataattgataaggattagaaagtgccttttctgcaaataaacttcagaataattaat 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 taaataattgataaggattagaaagtgccttttctgcaaataaacttcagaataattaat 307
Query: 664 attcatggactctgtt 679
||||||||||||||||
Sbjct: 306 attcatggactctgtt 291
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1077
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1067
Effective search space: 713823
Effective search space used: 713823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_f21.g1 MSMg01no519_f21.g1 CHROMAT_FILE:
MSMg01no519_f21.g1 PHD_FILE: MSMg01no519_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:04 2005
(636 letters)
>mm_chr6_98912305_98913340
Length = 1036
Score = 1187 bits (614), Expect = 0.0
Identities = 629/636 (98%), Gaps = 4/636 (0%)
Strand = Plus / Plus
Query: 1 tcaggcaaactcaaactgggagtgcagctcaggggtagacagctgaccagctgacttaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggcaaactcaaactgggagtgcagctcaggggtagacagctgaccagctgacttaat 260
Query: 61 ccccagcaccagctgactagacttaatcgccagcaccacagaaacaagtcaaataggaac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccagcaccagctgactagacttaatcgccagcaccacagaaacaagtcaaataggaat 320
Query: 121 gactcaacgtttcgattgcctgatggaagaactaagctagttttggctggtccctttcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactcaacgtttcgattgcctgatggaagaactaagctagttttggctggtccctttcta 380
Query: 181 gtcctggaacgctcctttgggtacctttctgctgttgtgaagaacccaggtcaactaatt 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcctggaacactcctttgggtacctttctgctgttgtgaagaacccaggtcaactaatt 440
Query: 241 gcccagccaatggcagtcctgcttgttatctatgaggtattttgtcatgctttgtttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcccagccaatggcagtcctgcttgttatctatgaggtattttgtcatgctttgtttttt 500
Query: 301 atttgagacagggtattgctacctagctctggctagcctggaactctgtgtacaccaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgagacagggtattgctacctagctctggctagcctggaactctgtgtacaccaggc 560
Query: 361 cggctttgaactcccaaagatccagctgcttttgcctcctgagggctggtattaaggtta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cggctttgaactcccaaagatccagctgcttttgcctcctgagggctggtattaaggtta 620
Query: 421 tgcacctccagcccagctcactcatggttttggaagatttatttattttatttataattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcacctccagcccagctcactcatggttttggaagatttatttattttatttataattc 680
Query: 481 gtgtgtgtgtgtgtgtgtgtgtgtggcgcgtgagtttatgtacaccgcgtatgcaaaggt 540
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 681 gtgtgtgtgtgtgtgtgtgtg----gcgcgtgagtttatgtacaccgtgtatgcaaaggt 736
Query: 541 gcccgcggggctagaggaacgtgtcagatcccctgtagctgcagttccagacagttgtga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gcccgcggggctagaggaacgtgtcagatcccctgtagctgcagttccagacagttgtga 796
Query: 601 gccgtcacgtggatactgggaatctccatcctttgg 636
||||||||||||||||||||||||||||||||||||
Sbjct: 797 gccgtcacgtggatactgggaatctccatcctttgg 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
