Query= MSMg01no519_h05.b1 MSMg01no519_h05.b1 CHROMAT_FILE:
MSMg01no519_h05.b1 PHD_FILE: MSMg01no519_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:10 2005
(614 letters)
>mm_chr6_100317747_100318756
Length = 1010
Score = 1081 bits (559), Expect = 0.0
Identities = 601/623 (96%), Gaps = 13/623 (2%)
Strand = Plus / Plus
Query: 5 gaattctacatgttccgcactacagtgagtttacaaacagtccatgtaagtccaccaagg 64
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacatgctgggcactacagtgagtttacaaacagtccatgtaagtccaccaagg 264
Query: 65 gggctggctatacacggttaagagtagttatacaatgcctatcactggagaggatgaggc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggctggctatacacggttaagagtagttatacaatgcctatcactggagaggatgaggc 324
Query: 125 aggaggatgttcatttctgttcacttattcgctttatatcccattacttcccccatccca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggaggatgttcatttctgttcacttattcgctttatatcccattacttcccccatccca 384
Query: 185 gtcacacaaaatatataaatttaaaaatgattccacaaatgaggaaaaacccgaggattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcacacaaaatatataaatttaaaaatgattccacaaatgaggaaaaacccgaggattt 444
Query: 245 tagatgtttagatgttcaggcacacagagctaatgagagctggggcagagtgtggagctc 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 tagatgtttagatgttcaggcacacagagctaatgagtgctggggcagagtgtggagctc 504
Query: 305 agcagtctgattttaagccactaactaactttactgaaatttaattccaaagggaaaacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcagtctgattttaagccactaactaactttactgaaatttaattccaaagggaaaacc 564
Query: 365 attaggacattaaaggaagacacaggttctccacattgtctggttgagtatggagctggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attaggacattaaaggaagacacaggttctccacattgtctggttgagtatggagctggg 624
Query: 425 gccttctgagcctgggcctttgtgctagttccagaactgggagagtggggtgtgtccaat 484
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 625 gccttctgagcctgggcctttgtgctagttccagaactgggcgagtggggggtgtccaat 684
Query: 485 gctggaagcaagccaacaggaaggacagtatccagagg-------------ttggcagac 531
|||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 685 gctggaagcaagcccacaggaaggacagtatccagaggcgcaaaggagaggttggcagac 744
Query: 532 aggagaggttggcagacaggacagtcaaagtggagtgtgcagggctggcacgggagcagg 591
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aggagaggatggcagacagcacagtcaaagtggagtgtgcagggctggcacgggagcagg 804
Query: 592 cactggcttcaagaagaaagggt 614
|||||||||||||||||||||||
Sbjct: 805 cactggcttcaagaagaaagggt 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1010
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1000
Effective search space: 604000
Effective search space used: 604000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_h05.g1 MSMg01no519_h05.g1 CHROMAT_FILE:
MSMg01no519_h05.g1 PHD_FILE: MSMg01no519_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:10 2005
(597 letters)
>mm_chr6_100445013_100446009
Length = 997
Score = 965 bits (499), Expect = 0.0
Identities = 514/519 (99%)
Strand = Plus / Minus
Query: 79 ccagacaccacacctggctgattttattactttttagtctgacaaatatgggtacctttg 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 ccagacaccacacctggctgattttattactttttagtctgacaaatatgggtacctttg 938
Query: 139 ggcacaaatgtacgtgtagagatcagaggacaacttttaggagtgagttctctgccttcc 198
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 937 ggcacaaatgtacgtgtagagatcagaggacaactttcaggagtgagttctctgccttcc 878
Query: 199 cctatctggagcccagggatctgaactcagggttgtctggcttggtacaaagtgtctgtg 258
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 877 cctatctggagcccagggatctgaactcagggttgtctggcttggtgcaaagtgtctgtg 818
Query: 259 ctgagcgatcttgctggtccagacccagttattttaaaagatgggaccctctattcttgg 318
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ctgagccatcttgctggtccagacccagttattttaaaagatgggaccctctattcttgg 758
Query: 319 gtctcttggtaccttgatttatgaggatgcctaagtgaaaagcctgccccttttagacca 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gtctcttggtaccttgatttatgaggatgcctaagtgaaaagcctgccccttttagacca 698
Query: 379 caaattcaatactgcgttcatgtcaggggaacaggctcggaattgtcctgggttaataaa 438
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 caaattcaatactgcattcatgtcaggggaacaggctcggaattgtcctgggttaataaa 638
Query: 439 atcacaggactcatcatataaatgaccagcattgaaaacggacaaaataatgctagacta 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 atcacaggactcatcatataaatgaccagcattgaaaacggacaaaataatgctagacta 578
Query: 499 ataaaacatacttcagatgagttctctattgaagtcattgtgaagccattggctgagcca 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ataaaacatacttcagatgagttctctattgaagtcattgtgaagccattggctgagcca 518
Query: 559 cggaagtcagctaatgaagagcctggctttccgagtgtc 597
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 517 cggaagtcagctaaggaagagcctggctttccgagtgtc 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
