Query= MSMg01no519_l17.b1 MSMg01no519_l17.b1 CHROMAT_FILE:
MSMg01no519_l17.b1 PHD_FILE: MSMg01no519_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:32 2005
(579 letters)
>mm_chr6_97196850_97197828
Length = 979
Score = 872 bits (451), Expect = 0.0
Identities = 473/483 (97%), Gaps = 5/483 (1%)
Strand = Plus / Minus
Query: 1 atctcgaatgccggaagccagagaggcacaggagaaaaccaacctcaaagatgtaatcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atctcgaatgccggaagccagagaggcacaggagaaaaccaacctcaaagatgtaatcaa 424
Query: 61 aacgctcaagccagtgccgagaaataggccgcccccgctggtggaaatcactcccagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aacgctcaagccagtgccgagaaataggccgcccccgctggtggaaatcactcccagaga 364
Query: 121 ccagctcttgaatgacatccgacacagcaatgtcgcctaccttaaacctgtaagtaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ccagctcttgaatgacatccgacacagcaatgtcgcctaccttaaacctgtaagtaacag 304
Query: 181 gagggagaaaagacgaacgcttccctgtgccccttcccactctctcttgtctatgttata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gagggagaaaagacgaacgcttccctgtgccccttcccactctctcttgtctatgttata 244
Query: 241 ttttagttttgagacaggcccccatgtgtttcaggctgacc-----tctactaggtattg 295
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 243 ttttagttttgagacaggcccccatgtgtttcaggctgacctcgaatctactaggtattg 184
Query: 296 agggtggtgtatcccaccatgcctggtttatgtggggattgataccagggctttgtgcgc 355
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 183 agggtggtgtatcccaccatacctggtttatgtggggattgatgtcagggctttgtgcgc 124
Query: 356 gctaggcaagggcactaccaaatgagctatatcctctgtaccagccccattagtttaaca 415
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 123 gctaggcaagggcactaccaaatgagctatatcctctgtgccagccccattagtttaaca 64
Query: 416 ccgggaggtcttgattgttggtaagcagaggtgaaagaccaatacagttaaatctctagt 475
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 63 ccgggaggtcttgattgttggtacgcagaggtgaaagaccaatacagttaaatctctagt 4
Query: 476 tac 478
|||
Sbjct: 3 tac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_l17.g1 MSMg01no519_l17.g1 CHROMAT_FILE:
MSMg01no519_l17.g1 PHD_FILE: MSMg01no519_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:32 2005
(589 letters)
>mm_chr6_97069698_97070686
Length = 989
Score = 992 bits (513), Expect = 0.0
Identities = 587/655 (89%), Gaps = 66/655 (10%)
Strand = Plus / Plus
Query: 1 agaggactacagattcagcaacgttatcatagcaagcactgcctccggcttgcttgttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agaggactacagattcagcaacgttatcatagcaagcactgcctccggcttgcttgttta 194
Query: 61 tctacaaaggtggcattagagatgaatacccaagcctacctcagaccccatagcacatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tctacaaaggtggcattagagatgaatacccaagcctacctcagaccccatagcacatcc 254
Query: 121 attaccttgggtccctcttgagtgatgttcagcctatgcagcacatgctgggagaaggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaccttgggtccctcttgagtgatgttcagcctatgcagcacatgctgggagaaggct 314
Query: 181 ctgaataatcctgtattctgacagccagagatctaaaacaaaagcaccagttcacacgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctgaataatcctgtattctgacagccagagatctaaaacaaaagcaccagttcacacgcc 374
Query: 241 agcaaacacccctgccctgggacttcaggtgatcgcaagaagtgtaaggatgtcttagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agcaaacacccctgccctgggacttcaggtgatcgcaagaagtgtaaggatgtcttagat 434
Query: 301 gcttaccagaggcgtgttatagaacagcccgtaccgcatgcggggcagcaacgaaaacac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gcttaccagaggcgtgttatagaacagcccgtaccgcatgcggggcagcaacgaaaacac 494
Query: 361 ggcttctttaaaacacacctaagaaggaagacagtttagaagatagcacagtaaggtgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggcttctttaaaacacacctaagaaggaagacagtttagaagatagcacagtaaggtgag 554
Query: 421 cgcccttcataggacaccactggaaggtacgcacccttcatagggtaggcagcgcagtaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cgcccttcataggacaccactggaaggtacgcacccttcatagggtaggcagcgcagtaa 614
Query: 481 agtgtgtgctctttataggata-------------------------------------- 502
||||||||||||||||||||||
Sbjct: 615 agtgtgtgctctttataggataccactgcaaggtatgcacccttcatagggtagacacca 674
Query: 503 ----------------------------gacaacaccatagtaaggtgagccctttatag 534
||||||||||||||||||||||||||||||||
Sbjct: 675 cagcaaggtctgtgcccttttcaggatagacaacaccatagtaaggtgagccctttatag 734
Query: 535 gacatcacagtaagggatgcacccttcaagccaaaagagcagttctcactttaca 589
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 735 gacatcacagtaagggatgcacccttcaagccaaaagagcagtcctcattttaca 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
