Query= MSMg01no519_o08.b1 MSMg01no519_o08.b1 CHROMAT_FILE:
MSMg01no519_o08.b1 PHD_FILE: MSMg01no519_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:45 2005
(545 letters)
>mm_chr6_88138637_88139580
Length = 944
Score = 1023 bits (529), Expect = 0.0
Identities = 538/541 (99%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 5 gaattcacctccgcaggtgcagagaagggaggggccatgtagctccctctcattcagatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctccgcaggtgcagagaagggaggggccatgtagctccctctcattcagatc 264
Query: 65 aggtaggcaggtcctggggtgtggctgctgggtaactcttgtacctcacagccagtgact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggtaggcaggtcctggggtgtggctgctgggtaactcttgtacctcacagccagtgact 324
Query: 125 atcctatgttcagtgaagcaaggaaggctttgtaacccggcccgtggggcttacagaccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcctatgttcagtgaagcaaggaaggctttgtaacccggcccgtggggcttacagaccc 384
Query: 185 tttaggtcctcagccactccttccccatgttgtgataatcccaactagtcgtcagaattc 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttaggtcctcagccactccttccccatgttgtgataatcccaactagtcgtcagaattc 444
Query: 245 cacagccctgccgttgttcaaaacatcacagacccctgaacaagcaaatgttattagaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacagccctgccgttgttcaaaacatcacagacccctgaacaagcaaatgttattagaga 504
Query: 305 attcactagaaacgataaaattgaccatcagacagaggaggggagtagaggaggggagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attcactagaaacgataaaattgaccatcagacagaggaggggagtagaggaggggagaa 564
Query: 365 gagaataactaccgtctaatggatgctatttggccataggcagacttcttcgggtggagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagaataactaccgtctaatggatgctatttggccataggcagacttcttcgggtggagg 624
Query: 425 gaccagcagacaggaggggaagggggttcttgtccagagactccaaagaaccgcaaggcc 484
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaccagcagacaggagggga-gggggttcttgtccagagactccaaagaaccgcaaggcc 683
Query: 485 tcagggccgctgtccctggaggaaggaggacggaaacctggcctgtgcgtcagcaaggcc 544
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 684 tcagggccgctgtccctggaggaaggaggacggaaacctggcctgggcgtcagcaaggcc 743
Query: 545 c 545
|
Sbjct: 744 c 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 944
Length adjustment: 10
Effective length of query: 535
Effective length of database: 934
Effective search space: 499690
Effective search space used: 499690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_o08.g1 MSMg01no519_o08.g1 CHROMAT_FILE:
MSMg01no519_o08.g1 PHD_FILE: MSMg01no519_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:45 2005
(628 letters)
>mm_chr6_88313446_88314473
Length = 1028
Score = 1122 bits (580), Expect = 0.0
Identities = 598/604 (99%), Gaps = 1/604 (0%)
Strand = Plus / Minus
Query: 25 tctttttaattttctgaagcgtatttgttgattagatatatgatctgtgttgacaggctt 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 tctttttaattttctgaagcgtatttgttgattagatatatgatctgtgttgacaggctt 969
Query: 85 cctatactttaaatatgacatcctcctggtctccatggctgggaccagctccatgcacta 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 cctatactttaaatatgacatcctcctggtctccatggctgggaccagctccatgcacta 909
Query: 145 ctgctctcacatatgagatggtttcttcccaagctggggaaatgccttcatcaacggcca 204
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 908 ctgctctcacatatgagatggtttcttcccaagctggggaaatgccctcatcaacggcca 849
Query: 205 aggctgttttctgcctagttgtagattttgagttaacggttggagtttgttcagcttctt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aggctgttttctgcctagttgtagattttgagttaacggttggagtttgttcagcttctt 789
Query: 265 aaatgtgcaggttaatattttcatcaaatttgggaaggaacagaccatgattttgtcatc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aaatgtgcaggttaatattttcatcaaatttgggaaggaacagaccatgattttgtcatc 729
Query: 325 catgatgcttccattcattcttcttgcttcataaaccaccattgtacttaagttgctttg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 catgatgcttccattcattcttcttgcttcataaaccaccattgtacttaagttgctttg 669
Query: 385 cctgagacacagctttgccactgcaactgggttctctccttccttttccccagatggatc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cctgagacacagctttgccactgcaactgggttctctccttccttttccccagatggatc 609
Query: 445 gatctcagttgtcagctctctattctgcatgtccagaccccctcctgaccttcactactg 504
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 608 gatctcagttgtcagctctctattctgcatgtccagatcccctcctgaccttcactactg 549
Query: 505 actgaagttttcatttcagttcttgcatttccaaactatggattttttttaaaatttctg 564
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 548 actgaagttttcatttcagttcttgcatttccaaactatggatttttaaaaaaatttctg 489
Query: 565 ttgtgttaacttacctagggtgat-aaaaaacaagcatctacttaccccagatagggaac 623
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 488 ttgtgttaacttacctagggtgataaaaaaacaagcatctacttaccccagatagggaac 429
Query: 624 tgat 627
||||
Sbjct: 428 tgat 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
