BAC Information

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BAC

Clone NameMSMg01-519P19
Chromosome6 (Build37)
Map Location 82,746,409 - 82,747,003
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2
Downstream geneEG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519P19.T7 (MSMg01no519_p19.b1)MSMg01-519P19.TJ (MSMg01no519_p19.g1)
ACCAG591128AG591129
length738747
length of high quality
(start - end)
658 (58 - 715)679 (69 - 747)
definitionCHROMAT_FILE: MSMg01no519_p19.b1 PHD_FILE: MSMg01no519_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:53 2005CHROMAT_FILE: MSMg01no519_p19.g1 PHD_FILE: MSMg01no519_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGC
ACTTTCTCTGGCCTTTCTAGGCACTGAGCATGCAAGTAGTGGACTTACTT
ACATGCAGGCAAAACACCCATACATATAAAATAAATTTTGGGGGAGGTTG
TGACAGGGTCTTACTGTGAAGCTCAGGCTGTTCTGGAATTCAATATATAG
ACCAGCTGGCTTCGAACTCACAGATATCTGCCTGTCTTGGCCTCATGAGT
GCTGGGATTAAAGGTATGCACTACTATACCCCACAATAAATAAATAAATA
AATATTTAAAAATCTAAATTGTTAAAAACCAAAAAATAAAAAGTAAAAAA
GAATTGTTTAAACCCAAAAAAATAAATAAAAAATAATTGTTATGCCATTT
GGAACAAGTGATTTCTTTATCATTATGTAATATTCTTCTTTGCCTCGGAT
GACTTTATGCACCTTGATATTTCTTTGCTGGAAAGTAATACAACTCCTCT
TGCTTTGACTCGTGTTTTTCTCCACACGCTTACTTTTAATCTCTATATAT
CTTTTATTTAATATGGGATTCTTTTTTTTTAAACTAATTTTCTTTTAAGA
TTTATTTATTATATGTAAGCACACTGTAGCTGTTTTCAGACACACCAGAA
GAGGGTGCCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCT
GGGATTTGAACTCAGGACCTTCAGAACAGCAGTCAGTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGATGCAAATTTGAATTACAAGGCACTTTCA
ATTCAAATGAAAAAATACAATATTGAAAGCTATATTGAAAAAGATAGTAG
TTTTGTATATTCTTGCAGAGGGAAATTTAACAATTTTTTGAATTGAAAAT
GGGGCCAGCAAGATGGCTCAGTGGTGGGAACCTGCCTTGAGTTCTATCCC
AAGACACTTATTGAGACCTACAAACTGTCTCTTGACCTCCACAAACATAC
AGTGACAAACTTGCATCCTCCTAGCTACCCATCCCCACACCAATAAATAA
AAACAAAGGCTGTTTTAATTAAAACTAAAAACATTTTGATTCTTAAGATT
TTATTTACAAAATTACTTGAATCTGTGTAATGTTATATATTCCATTTTCT
TTTCAGACAAGGTGACATACACATCTCATCCCAGCAATCAGAAGGCATGA
GTGGACAGCCTGATCTACATAGTGAGTTCTAGGCTAGCCAGGAATACTTG
GTAAGACCTTGTCTCAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG
AAGGAAGGAAGGGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_p19.g1 MSMg01no519_p19.g1 CHROMAT_FILE:
MSMg01no519_p19.g1 PHD_FILE: MSMg01no519_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:53 2005
         (679 letters)



>mm_chr6_82746209_82747292
          Length = 1084

 Score =  907 bits (469), Expect = 0.0
 Identities = 562/597 (94%), Gaps = 11/597 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatgcaaatttgaattacaaggcactttcaattcaaatg---aaaaaatacaatattg 57
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 201 ttgatgcaaatttgaattacaaggcactttcaattcaaatgaaaaaaaaatacaatattg 260

                                                                       
Query: 58  aaagctatattgaaaaagatagtagttttgtatattcttgcagagggaaatttaacaa-- 115
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||  
Sbjct: 261 aaagctatattgaaaaagatagtagttttgtatattctcacagagggaaatttaacaatt 320

                                                                       
Query: 116 --ttttttgaattgaaaatggggccagcaagatggctcagtggtgggaacctgccttgag 173
             ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttttt--attgaaaatggggccagcaagatggctcagtggtgggaacctgccttgag 378

                                                                       
Query: 174 ttctatcccaagacacttattgagacctacaaactgtctcttgacctccacaaacataca 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttctatcccaagacacttattgagacctacaaactgtctcttgacctccacaaacataca 438

                                                                       
Query: 234 gtgacaaacttgcatcctcctagctacccatccccacaccaataaataaaaacaaaggct 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtgacaaacttgcatcctcctagctacccatccccacaccaataaataaaaacaaaggct 498

                                                                       
Query: 294 gttttaattaaaactaaaaacattttgattcttaagattttatttacaaaattacttgaa 353
           ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 499 gttttaattaaaactaaaaccattttaattcttaagattttatttacaaaattacttgaa 558

                                                                       
Query: 354 tctgtgtaatgttatatattccattttcttttcagacaaggtgacatacacatctcatcc 413
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 559 tctgtgtaatgttatatattccattttctttccagacaaggtgacatacacatctcatcc 618

                                                                       
Query: 414 cagcaatcagaaggcatgagtggacagcctgatctacatagtgagttctaggctagccag 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cagcaatcagaaggcatgagtggacagcctgatctacatagtgagttctaggctagccag 678

                                                                       
Query: 474 gaatacttggtaagaccttgtctcaaagaaagaaagaaagaaagaaagaaagaaagaaag 533
           ||||||||||||||||||||||||||| ||| ||| ||| ||| ||| ||| | ||||||
Sbjct: 679 gaatacttggtaagaccttgtctcaaataaataaataaataaataaataaatagagaaag 738

                                                                    
Query: 534 aaagaaagaaagaaagaaaga-a-agagagagagagagagagagagagagagagaga 588
           | | | | | ||| ||| ||| | ||||| |||||| ||||||||| ||| ||||||
Sbjct: 739 acacacatacagagagacagagacagagacagagagggagagagagggagggagaga 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1084
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1074
Effective search space:   718506
Effective search space used:   718506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)