BAC Information

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BAC

Clone NameMSMg01-520A10
Chromosome6 (Build37)
Map Location 85,868,247 - 86,047,138
singlet/doubletdoublet
Overlap geneTprkb, EG434057, LOC665213, Dusp11, Figla, Add2
Upstream geneExoc6b, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1
Downstream geneTgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520A10.T7 (MSMg01no520_a10.b1)MSMg01-520A10.TJ (MSMg01no520_a10.g1)
ACCAG591158AG591159
length763760
length of high quality
(start - end)		667 (44 - 710)685 (76 - 760)
definitionCHROMAT_FILE: MSMg01no520_a10.b1 PHD_FILE: MSMg01no520_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:56 2005CHROMAT_FILE: MSMg01no520_a10.g1 PHD_FILE: MSMg01no520_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,046,541 - 86,047,138)(85,868,247 - 85,868,931)
sequence
CTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTCTCCTGGCCTGAGTTCCAGATCTTTACAAAAATTTTTTATCATT
ATTTTTATTTTTTATTTTATGTGTATGGGTGTTTGCCTTCATGTTTGTCT
TAGCATCACATGCATGCAGTACCTGCAAAGGCCAGAACAGAGGGTGTCAA
ATTTCCTGGGACTAGGGTTATAGACAGCTGTGAGCAGCCATATGGCTGCT
GAGAATGGAAGCGAAGTCCTCTGGAAGAGCAGCTCTTAACTACTGAACCA
TCTCTCTGCCCCCTTTCCAGAATTTTTAGAGGATGACATGGCTATACTCC
AGATGATATCTGCTCAGGGAGAAACTTAGGCACTCCAGGCTGGCTGCCAC
AGGAAGCCAGGCACTACTCACCGCTGCGGTGGCAGGCGTGTGCAGGTGGA
TGGCACACCGCACGTCGGGCCTGGCGGCATAGATGGCTGAGTGCAGACTG
AAGCCCGTGGTGTCCACCGGGAAGCAACTGCTGCCCTTCTCCACCACCTC
TCCCAGAATGTTCACCTTAATCTAGGCAGTAAAGAAGAGACCAGACTCAG
GGCTCCTGCCCTCTTCCACACATGGGCCCAGTGCATTCCCTGGCCCACGT
CCACCATTCCAGACAACAGGAGCAATGGCTGGCTTTGGTGCTGGGGTACA
GCAACAGGGAGTCCTGCCTGTGGTGAGTCCTAAGGAGTGGCAGGTGGATT
CTGCAGGGAAAGG

ACGATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAACCCCATTTT
TAATGGGGTTATTTGAATTTCTGGAGTCTAGCTTCTTGAGCTCTTTGTAT
ATATTGGATATTAGTCCCCTATCTGGTTTAGGATTGGTAAAAATCCTTCC
CCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTCCCTTGC
AGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCCTACA
GCACAAGCCATTGCTTTCTGTTTAGGAATTTTTCCCCTGTGCGTCAACAT
GATTCTTAACAGGTGTCAAAACAGATCAATACAAGTGATGATTCCAAAGT
TTCTGGTCTAAGCGACTCTTTCACTAAACCAGAGCAAACTGTACTGAGGC
TTTCTAAAAAGCCCCTTTCCCTTACTATTAAAAATCAGACCAGAGTTTTG
ATTCCAAGCACCCACATTGCATTTCACGGAAGTCTATAACTCCAGTTCCA
TGGAATCCAACACCCTCTTCTGGCTGCTGCAGGTATCAGGCAAGAATGTA
GTACATCCTTAAATTTTGTTTGATGTCTGTAGAAGTTCAGAACATGCACA
GTGGAATATTTTAAGAGTGAAATAAAAGTCACTAATCATCTTGGTACTCA
AGATTTCTGCAGTTTGTTTTCTCCTTTTTCTATGCATGTTTTTACATGCC
TACCATGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_a10.b1 MSMg01no520_a10.b1 CHROMAT_FILE:
MSMg01no520_a10.b1 PHD_FILE: MSMg01no520_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:56 2005
         (667 letters)



>mm_chr6_86046072_86047138
          Length = 1067

 Score = 1102 bits (570), Expect = 0.0
 Identities = 591/598 (98%)
 Strand = Plus / Minus

                                                                        
Query: 70   tattttatgtgtatgggtgtttgccttcatgtttgtcttagcatcacatgcatgcagtac 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 tattttatgtgtatgggtgtttgccttcatgtttgtcttagcatcacatgcatgcagtac 1008

                                                                        
Query: 130  ctgcaaaggccagaacagagggtgtcaaatttcctgggactagggttatagacagctgtg 189
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1007 ctgcaaaggccagaacagagggtgtcaaatttcctgggactagggttacagacagctgtg 948

                                                                        
Query: 190  agcagccatatggctgctgagaatggaagcgaagtcctctggaagagcagctcttaacta 249
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 947  agcagccatatggctgctgagaatggaagcaaagtcctctggaagagcagctcttaacta 888

                                                                        
Query: 250  ctgaaccatctctctgccccctttccagaatttttagaggatgacatggctatactccag 309
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 887  ctgaaccatctctctgccccctttccagaatttttagatgatgacatggctatactccag 828

                                                                        
Query: 310  atgatatctgctcagggagaaacttaggcactccaggctggctgccacaggaagccaggc 369
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 827  atgatatctgctcagggagaaacttaggcactccgggctggctgccacaggaagccaggc 768

                                                                        
Query: 370  actactcaccgctgcggtggcaggcgtgtgcaggtggatggcacaccgcacgtcgggcct 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  actactcaccgctgcggtggcaggcgtgtgcaggtggatggcacaccgcacgtcgggcct 708

                                                                        
Query: 430  ggcggcatagatggctgagtgcagactgaagcccgtggtgtccaccgggaagcaactgct 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  ggcggcatagatggctgagtgcagactgaagcccgtggtgtccaccgggaagcaactgct 648

                                                                        
Query: 490  gcccttctccaccacctctcccagaatgttcaccttaatctaggcagtaaagaagagacc 549
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 647  gcccttctccaccacctctcccagaatgttcactttaatctaggcagtaaagaagagacc 588

                                                                        
Query: 550  agactcagggctcctgccctcttccacacatgggcccagtgcattccctggcccacgtcc 609
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 587  agactcagggctcctgccctcttccacacatgggcccagtgcattccctggcccacatcc 528

                                                                      
Query: 610  accattccagacaacaggagcaatggctggctttggtgctggggtacagcaacaggga 667
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 527  accattccagacaacaggagcaatggctggccttggtgctggggtacagcaacaggga 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no520_a10.g1 MSMg01no520_a10.g1 CHROMAT_FILE:
MSMg01no520_a10.g1 PHD_FILE: MSMg01no520_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:56 2005
         (685 letters)



>mm_chr6_85868047_85869131
          Length = 1085

 Score = 1309 bits (677), Expect = 0.0
 Identities = 683/685 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgaaccccatttttaatggggttatttgaatttctggagtctagcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgaaccccatttttaatggggttatttgaatttctggagtctagcttc 260

                                                                       
Query: 61  ttgagctctttgtatatattggatattagtcccctatctggtttaggattggtaaaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagctctttgtatatattggatattagtcccctatctggtttaggattggtaaaaatc 320

                                                                       
Query: 121 cttccccaatctgttggtggcctttttgtcttattgacagtgtcttttcccttgcagaag 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttcccaatctgttggtggcctttttgtcttattgacagtgtcttttcccttgcagaag 380

                                                                       
Query: 181 ctttgcaattttatgaggtcccatttgtcaattcttgatcctacagcacaagccattgct 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ctttgcaattttatgaggtcccatttgtcaattcttgatcttacagcacaagccattgct 440

                                                                       
Query: 241 ttctgtttaggaatttttcccctgtgcgtcaacatgattcttaacaggtgtcaaaacaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgtttaggaatttttcccctgtgcgtcaacatgattcttaacaggtgtcaaaacaga 500

                                                                       
Query: 301 tcaatacaagtgatgattccaaagtttctggtctaagcgactctttcactaaaccagagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaatacaagtgatgattccaaagtttctggtctaagcgactctttcactaaaccagagc 560

                                                                       
Query: 361 aaactgtactgaggctttctaaaaagcccctttcccttactattaaaaatcagaccagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaactgtactgaggctttctaaaaagcccctttcccttactattaaaaatcagaccagag 620

                                                                       
Query: 421 ttttgattccaagcacccacattgcatttcacggaagtctataactccagttccatggaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttgattccaagcacccacattgcatttcacggaagtctataactccagttccatggaa 680

                                                                       
Query: 481 tccaacaccctcttctggctgctgcaggtatcaggcaagaatgtagtacatccttaaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccaacaccctcttctggctgctgcaggtatcaggcaagaatgtagtacatccttaaatt 740

                                                                       
Query: 541 ttgtttgatgtctgtagaagttcagaacatgcacagtggaatattttaagagtgaaataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtttgatgtctgtagaagttcagaacatgcacagtggaatattttaagagtgaaataa 800

                                                                       
Query: 601 aagtcactaatcatcttggtactcaagatttctgcagtttgttttctcctttttctatgc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagtcactaatcatcttggtactcaagatttctgcagtttgttttctcctttttctatgc 860

                                    
Query: 661 atgtttttacatgcctaccatgcct 685
           |||||||||||||||||||||||||
Sbjct: 861 atgtttttacatgcctaccatgcct 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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