Query= MSMg01no520_g14.b1 MSMg01no520_g14.b1 CHROMAT_FILE:
MSMg01no520_g14.b1 PHD_FILE: MSMg01no520_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:27 2005
(714 letters)
>mm_chr6_46885346_46886459
Length = 1114
Score = 1245 bits (644), Expect = 0.0
Identities = 691/710 (97%), Gaps = 8/710 (1%)
Strand = Plus / Plus
Query: 5 gaattcagcctgttatgcctggactatagttagttcagtttcatgtagttccaaattttc 64
||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcctgttaggggtggactatagttagttcagtttcatgtagttccaaattttc 264
Query: 65 acaaggttcaaactgtgatacttactgtgatctgcaagcctctgctgagtactcagtttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaaggttcaaactgtgatacttactgtgatctgcaagcctctgctgagtactcagtttt 324
Query: 125 tagcaagttatggttcttgccaaggttaaaaaaggtagaaccagaaacaacctgtgttat 184
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 325 tagcaagttatggttcttgccaagatttaaaaaggtagaaccagaaacaacctgtgttat 384
Query: 185 taaatatatacagctaaatattttatacttagaagtctggaaagtaacagaggaagccct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaatatatacagctaaatattttatacttagaagtctggaaagtaacagaggaagccct 444
Query: 245 tctgtccaaaaattcaggcataagctgcaatctatcctgaattcagaaatgtattcatgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgtccaaaaattcaggcataagctgcaatctatcctgaattcagaaatgtattcatgt 504
Query: 305 ggctggagaaatgactcagtggttaagagaacttactatgcaatcatgaaagttggagtt 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggctggagaaatgactcaatggttaagagaacttactatgcaatcatgaaagttggagtt 564
Query: 365 ctgatatcacatccatggaacaagctagtcagctagtcattctgctaatacttataattc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgatatcacatccatggaacaagctagtcagctagtcattctgctaatacttataattc 624
Query: 425 tagctccagggttctaacatcctctaatgcctttgtatgtatacacacacacacacacac 484
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 625 tagctccagggttctaacatcctctaatgcctttgtatgta--cacacacacacacacac 682
Query: 485 acacacacacacacacacacacacacagtagaaaagaaagtaacatattcaagaagcaac 544
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 683 acacacacacacacacacaca-----agtagaaaagaaagtaacatattcaagcagcaac 737
Query: 545 cttttgccagtattgggtctggaaatgttgaaaggtcaactcaatcacttgattacaaca 604
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 738 cttttgccagtattgggtctggaaatgttgaaaggtcaactcaatctcttgattacaaca 797
Query: 605 ggccaagatattctctttctgtgttgcctgatttctttcctttcaaatgcatggatgtaa 664
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ggccaggatattctctttctgtgttgcctgatttctttcctttcaaatgcatggatgtaa 857
Query: 665 aggtggagagggacacatgaaaaaaattactgtaccatttcatgtgtaca 714
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aggtggagaga-acacatgaaaaaaattactgtaccatttcatgtgtaca 906
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space: 777216
Effective search space used: 777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no520_g14.g1 MSMg01no520_g14.g1 CHROMAT_FILE:
MSMg01no520_g14.g1 PHD_FILE: MSMg01no520_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:27 2005
(684 letters)
>mm_chr6_47029534_47030617
Length = 1084
Score = 1093 bits (565), Expect = 0.0
Identities = 618/655 (94%), Gaps = 30/655 (4%)
Strand = Plus / Minus
Query: 30 acaggagatattaaaaacacttacaaaaggctttctatatggatctataactgtctccac 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 acaggagatattaaaaacacttacaaaaggctttctatatggatctataactgtctccac 1025
Query: 90 tgacatgaagtaatctcaaaatagttctctgggaaatgtgagatttctagacagcttgag 149
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1024 tgacatgaagtaatctcaaaatagttctctgggaaatgtgagatttccagacagcttgag 965
Query: 150 tatctatcctcccttcttgaacttacatgtatattcacacacacacacacacacacacac 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 tatctatcctcccttcttgaacttacatgtatattcacacacacacacacacacacacac 905
Query: 210 acacacacacacacacacacacacacatacacacatacacacacacacactggaatacct 269
|||||| ||||||||||||||||||||||||
Sbjct: 904 acacac------------------------------acacacacacacactggaatacct 875
Query: 270 ccacatggttttcaggaaacctttgttagtgatatgccatgcttggcatgcaggagagtt 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 ccacatggttttcaggaaacctttgttagtgatatgccatgcttggcatgcaggagagtt 815
Query: 330 tgctctctgacctgtagtttgacatcatggaaactgatctaaaacaacttccaggatcca 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 tgctctctgacctgtagtttgacatcatggaaactgatctaaaacaacttccaggatcca 755
Query: 390 gaggctgaagcagggaaggtctgcatgacatgccccatggctggctaaatcttcacaggg 449
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 754 gaggctgaagcagggaaggtctgcatgacatgccgcatagctggctaaatcttcacaggg 695
Query: 450 cagcggcattttagatgagaaaaaatagtctttgaaagcccttgctctttccagcactca 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cagcggcattttagatgagaaaaaatagtctttgaaagcccttgctctttccagcactca 635
Query: 510 aagccacagtcagatttctggtattgcacagcttccatcttctgtttcacctataaatgg 569
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 634 aagccacagtcagatttctggtattgcacagcttcgatcttctgtttcacctataaatgg 575
Query: 570 gcttctcccaagtgactcatttgccttttctgcatgtgacatcttccacagagggctcct 629
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 574 gcttctcccaagtgactcacttgccttttctgcatgtgacatctcccacagagggctcct 515
Query: 630 atacaagagggatgttgaaatgctcttcatcttaaacatggctaccctatgaagg 684
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 514 atacaagagggatgttgaaatactcttcatcttaaacatggctaccctatgaagg 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
