Query= MSMg01no520_i12.b1 MSMg01no520_i12.b1 CHROMAT_FILE:
MSMg01no520_i12.b1 PHD_FILE: MSMg01no520_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:36 2005
(685 letters)
>mm_chr6_34292270_34293357
Length = 1088
Score = 1237 bits (640), Expect = 0.0
Identities = 669/681 (98%), Gaps = 5/681 (0%)
Strand = Plus / Minus
Query: 8 ttctcagcatttaactcaaactatctgtactatacactttctccaggagtctgactggga 67
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 887 ttctcagcatttaactcaaactatctgtactatacactttctctaggagtctgactggga 828
Query: 68 tcttcctgagagcaagacccaagcccagttaacttcgttcagtttccagggcaatccata 127
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tctt-ctgagagcaagacccaagcccagttaacttcgttcagtttccagggcaatccata 769
Query: 128 gtcaataatattcatttgtgagtgaatagagtagatggatgatacatgaacagatatggt 187
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 768 gtcaataatattcatttgtgagtgaatagaatagatggatgatacatgaacagatatggt 709
Query: 188 tcatagggcaggggcagttggaaatgagtccacagg----tagatacataggtgagggca 243
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 708 tcatagggcaggggcagttggaaatgagtccacaggtagatagatacataggtgagggca 649
Query: 244 gccagattgtgacttggagtggaaagcaagaattgtatgagtataaccaaactaagaatc 303
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 648 gccagattgtgacttggagtggaaagcaagaattgtatgagtacaaccaaactaagaatc 589
Query: 304 tcaggaattattaataggtgttatttttataggcagttacttttaatgaggatcccaaga 363
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tcaggaattattaatagatgttatttttataggcagttacttttaatgaggatcccaaga 529
Query: 364 aggtgttatgtgcatatgtggggacctggtaaacacccataaaccaagaccagaccaggg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aggtgttatgtgcatatgtggggacctggtaaacacccataaaccaagaccagaccaggg 469
Query: 424 acctcttcatagagttccctgccatctcctgaacaaagctgtggtggggtatgtgaggag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 acctcttcatagagttccctgccatctcctgaacaaagctgtggtggggtatgtgaggag 409
Query: 484 cagcagccaactgctttaccagaacttcttctgcagggtgatgcagaaggggaaactgtc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cagcagccaactgctttaccagaacttcttctgcagggtgatgcagaaggggaaactgtc 349
Query: 544 tcccctagggtccatgcacagtggggtgagcaggtagtttcttgagatgctatccaggag 603
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 348 tcccctagggtccatgcacagtggggtgagcagggagtttcttgagatgctatccaggag 289
Query: 604 ccctgcttggaaggggtgttttcgtggctgggacctctcangttgtccttcgttattgac 663
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 288 ccctgcttggaaggggtgttttcgtggctgggacctctcaggttgtccttcgttattgac 229
Query: 664 caataaaactaggtgcaagtt 684
||||||||||| |||||||||
Sbjct: 228 caataaaactaagtgcaagtt 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1088
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1078
Effective search space: 727650
Effective search space used: 727650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_i12.g1 MSMg01no520_i12.g1 CHROMAT_FILE:
MSMg01no520_i12.g1 PHD_FILE: MSMg01no520_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:36 2005
(656 letters)
>mm_chr6_34242306_34243361
Length = 1056
Score = 1056 bits (546), Expect = 0.0
Identities = 621/656 (94%), Gaps = 19/656 (2%)
Strand = Plus / Plus
Query: 1 tatctggtttcaatattgctgcataagtgtgaggcaggcataaagggagcaaacgacaca 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatctggtttcaatatcgctgcataagtgtgaggcaggcataaagggagcaaacgacaca 260
Query: 61 aggatgtaaagggaaaggaccggggtgctcatgaatttggtttctggacataagagaagg 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 aggatgtaaagggaaaggaccggggtgctcatgaatttggtttctggacacaagagaagg 320
Query: 121 gggaaatgatatatggggtcattagcaggtggattattgggaatagcaaggcatgactgg 180
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gggagatgatatatggggtcattagcaggtggattgttgggaatagcaaggcatgactgg 380
Query: 181 cctgccatgtctgtcaactggggcaagctgtgcgacacacaccctgtagggatcatgtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgccatgtctgtcaactggggcaagctgtgcgacacacaccctgtagggatcatgtat 440
Query: 241 ttacacagtggctcggatcatgtatttacacattggctccgagcttgctgtgtctgcgcc 300
||||||||||||||||| |||| | ||||||||||||||||| ||
Sbjct: 441 ttacacagtggctcgga----------acac----g----gagcttgctgtgtctgcacc 482
Query: 301 tccttccctcctcctcaaacctgcatgcattctgtatacattaagagtttttcttgtctg 360
||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||
Sbjct: 483 tccttccctcctcctcaaa-ctgcatgcattctgtatacgttaagagtggttcttgtttg 541
Query: 361 atgggagcaacgctacctccctcacaaactctcggtgagggttggaggtggtgtgtacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 542 gtgggagcaacgctacctccctcacaaactctcggtgagggttggaggtggtgtatacca 601
Query: 421 agggcttagtgttgtacccgctccttctgttagtggctttgacagtggtactgccaggaa 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 602 agggcttagtgttgtacccgctccttctgttagtggcttagacagtggtactgccaggaa 661
Query: 481 gggtctctccacgtacaatcactaaaacagaagtgttgatccagcttagccagcagaggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gggtctctccacgtacaatcactaaaacagaagtgttgatccagcttagccagcagaggg 721
Query: 541 aggcacacaccgtgctataagcttaggaggctatgaggtggtaagcatggacagaaacgg 600
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 722 aggcacacaccgtgctataagcttaggaggctaggaggtggtaagcatggacggaaacgg 781
Query: 601 cctttgtctcacacagcctaagcaggaggaacaaggctcccatctgcctttgcttg 656
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 782 cctttgtctcacacagcctgagcaggaggaacaaggctcccgtctgcctttgcttg 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
