NNNNTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTGTATTGCTTCCTACCTGTGATCTGAGCATTCGGAAGG
GTAAGGCCCATGAACTGAGAGTTCTAGGCTAGCTTGGCCTCAGTTGCAAG
ACTGTCTCATTTAAAGAAAAAGGAAAGATTAGGGCAGCAACAAATGTCTT
AGTGACTTTAGAAAAACATGCACTCATGGTAACTAATATCTGGAGATCTT
AGCTGCAGCCACACTATGGTCGTAACATGACATACATGAAATTGCATTTT
TATCCACACTGTTCTTATGTTTTACACTTAGATTCTTCAAATCAGTCCTG
ATAAGAGTATATACAATTTTAGAAACTCATTAAGGCATCTAGCAAATTTT
ATCATTGGTGGGATTCTTCAGTGAGACCATAGCTTTTAAAACATTGCTAC
AAGGTCTGTATTGAAACCATAATTGTAGGAAGGCAGGTGGTCAGCTTTTG
AGGACAGGTACCTACATGATCTGAGGCAGCAGTGTCCAACCAGCTCTCAG
TGTCAGGAACTCCTTTCTTTGCTGGGTTTGTTTGCTTGTAACTTGGTTTC
TCCACATTGAATTTTTCCTATCTTGGCTGTGGTGTGGAACGGTGCTTCTG
CATGTGAAATAGCACTTGGGAGCTCAGCAGGTGATGCGATGTTGACTTAC
AGCAGCTCTTTAAAATCATATGGATTTTTTTTTCTATATAAGTAAAGTGT
CATATGCCTTGTTTTGNTTATTT

NAAGCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCAAGAAAGGACTTTCGAAG
TTCTGTGTTCTCGGGGTCCCCAATGGAGGAGCTAGAGAAAGGACCCAAGG
AGCTGAAAGGGTTTGCAGCCCCATAAGAGGAACAACAATATGACCCAACC
AGTACCCTCAGAGCTTCCAGGGACTAAACCACCAACCAAAGAGCCACAGG
ACTCATGGCTCCAGCTGCATATGAAGCAGAAGATGGCCTATTTGGTCATC
AGTGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCTATGCCCCCAGTGTA
GGGGAGTGCCAGTACCAGAAAGTTGGAGTGGGTGGGTTGGTGAGCAGCGG
GAGGAGGGAGGGAATAGGGGGTTTTTGGAGGGGNNNNNNNNNNNGNNNNN
NNNNNTNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNGNG
NNNNNGNNNNNNTNNTTGNNNGGNGNNNGGNTNNTNNNNGNGTNNNNTNT
NNGNTTTTTNTTTTTTNTGGTTTTGTTTTGTTTGTGTTGTGTTTGNTTTT
GGNGTTTTTGTTNTGTTTTTTTTTGTGTTGTTTGGGGTGTTTTTTTTNGG
GTGGTTTNNNGGTTTTTGGTTTTGTGGGTTTTGGGGGGTNNTGTTTTGTT
TGGGTGTTTGTGTTGTGTTTTGGTTTTTGTTTTTTTTGTTTGTNTGGTTG
NTTG

Query= MSMg01no520_m20.b1 MSMg01no520_m20.b1 CHROMAT_FILE:
MSMg01no520_m20.b1 PHD_FILE: MSMg01no520_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:57 2005
         (581 letters)



>mm_chr6_119333591_119334571
          Length = 981

 Score = 1069 bits (553), Expect = 0.0
 Identities = 571/577 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgtattgcttcctacctgtgatctgagcattcggaagggtaaggcccatgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gaattctgtgtattgcttcctacctgtgatctgagcattcggaagggtaaggcccatgaa 725

                                                                       
Query: 65  ctgagagttctaggctagcttggcctcagttgcaagactgtctcatttaaagaaaaagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ctgagagttctaggctagcttggcctcagttgcaagactgtctcatttaaagaaaaagga 665

                                                                       
Query: 125 aagattagggcagcaacaaatgtcttagtgactttagaaaaacatgcactcatggtaact 184
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 664 aaggttagggcagtaacaaatgtcttagtgactttagaaaaacatgcactcttggtaact 605

                                                                       
Query: 185 aatatctggagatcttagctgcagccacactatggtcgtaacatgacatacatgaaattg 244
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aacatctggagatcttagctgcagccacactatggtcgtaacatgacatacatgaaattg 545

                                                                       
Query: 245 catttttatccacactgttcttatgttttacacttagattcttcaaatcagtcctgataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 catttttatccacactgttcttatgttttacacttagattcttcaaatcagtcctgataa 485

                                                                       
Query: 305 gagtatatacaattttagaaactcattaaggcatctagcaaattttatcattggtgggat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gagtatatacaattttagaaactcattaaggcatctagcaaattttatcattggtgggat 425

                                                                       
Query: 365 tcttcagtgagaccatagcttttaaaacattgctacaaggtctgtattgaaaccataatt 424
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 424 tcttcagtgagaccatagcttttaaaacgttgctacaaggtctgtattgaaaccataatt 365

                                                                       
Query: 425 gtaggaaggcaggtggtcagcttttgaggacaggtacctacatgatctgaggcagcagtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtaggaaggcaggtggtcagcttttgaggacaggtacctacatgatctgaggcagcagtg 305

                                                                       
Query: 485 tccaaccagctctcagtgtcaggaactcctttctttgctgggtttgtttgcttgtaactt 544
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 304 tccaaccagctctcagtgtcaggaactccgttctttgctgggtttgtttgcttgtaactt 245

                                                
Query: 545 ggtttctccacattgaatttttcctatcttggctgtg 581
           |||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggtttctccacattgaatttttcctatcttggctgtg 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)