BAC Information

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BAC

Clone NameMSMg01-521E04
Chromosome6 (Build37)
Map Location 57,477,091 - 57,477,715
singlet/doubletsinglet
Overlap genePpm1k
Upstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822
Downstream geneHerc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521E04.T7 (MSMg01no521_e04.b1)MSMg01-521E04.TJ (MSMg01no521_e04.g1)
ACCAG592097AG592098
length741742
length of high quality
(start - end)
682 (51 - 732)625 (81 - 705)
definitionCHROMAT_FILE: MSMg01no521_e04.b1 PHD_FILE: MSMg01no521_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:32 2005CHROMAT_FILE: MSMg01no521_e04.g1 PHD_FILE: MSMg01no521_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGGTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCCTCTTCAAACCTATCCTCCCTCCTGATTCTATGAGGGAG
CTCCCCCACCCAAAATTTACTAATCACTGACCTATTTTCCCCTACTTAAG
TGCATCAAGTCACCACAGGACTAAGGGGTTCCCCTTCCATTGATGCCAGA
TAAGGCAATCGATCCTCTGCTACATAAGCAGCAGGACCATGGATCCTTCA
ATGTGTAGTCTTTGGTTGGTTGTTTGGTCCCTGAGAGCTGCGCGGGGGTC
TGGTTATTTGATATTGTTCCTCCTATGGGGTTGAAATTTTTTTTGGCTTC
TTAAGTTCTTCCCATAACTCCTCCACTGGGATCCTTGTTCTCATTCCAAT
GGTTGGCTGTGAACATCCACATTGTATTGGTCAGACTCTGGAAGATCCTC
TCAGGGGACAGCCATACCAGGCTCCTGTCAGCAAGCACATCTTGGCATCA
GCAATAGTATCTGGGTTTGGTGTCTGCAGATGGGATGGATCCCTAGGTGG
GGCAATCTCTGAATGGCCTTTCCTTCAGTTTCTGCTCTACCCTTTTGTCC
CTGCATTTCCTTTAGAAAGGAACAATTCTGGGATAATATTTTTGAGATGG
GTGTGTAGTCCCATCCCTCAAACAAGGGAAGTGCCTAACAGGGGGATATG
GTCTCTACAGGTCCTTTGCTTCCCTTTGTTGGATATTTTAA
NNCCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACCAGCCACGGACAAAA
AGTGAGACCCTCTTTAGAAGAAGAAAAGGAGGAAGAGTCATGCTTGTCTT
GGATGTTGGAGAGCTGCTGGCTTTAGAGGAAAGGAGGGTTAGACTATTAT
TGTAAATGTATGGGTCACTTGCTTACAATCTGGCCTGCTTGCCATCAACA
GTGCCCAGTTCCTCATTTACCTCTTCATGAGCACCTACCACAAAGCACCA
TTGGAACTGGCTTATATTGCTAGGAGATGTTAACATGGAACCAACTGATA
TTGGCCGTGATAACATAAAAAACAAAGTTTAGTAGCTAACAAATCGTAAA
AGTCAGATCTGACATTTATACCACACTCCCTCTCCAAGGCACAGGGACAT
CTCTGAGGAAGAAGTGGAAAGACTGTAAGAGGCAGAAGTCACTGGTGAGG
ATGAGGGAGCAGTGAAATAGGGACTTCTGTATTTGACAGGCCTGCTGAAC
TGAGAAGCACAGAGCAGCCTTGGTGCACCAAAGCCAATCAGCATTCTAAT
GGAGAGTGGGGAGGGTGCATGAGTGCCCACCCCTAACTGGGGAGTTACGG
ACAGTAGGTGGCCTCTAGGGGAGGGAGAGTCAGTTTAAGTGTGTGGCTCC
TGGTAGGTCACCTATGCCCCAGTCAATGACCCCACACCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_e04.g1 MSMg01no521_e04.g1 CHROMAT_FILE:
MSMg01no521_e04.g1 PHD_FILE: MSMg01no521_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:32 2005
         (625 letters)



>mm_chr6_57477016_57478040
          Length = 1025

 Score = 1139 bits (589), Expect = 0.0
 Identities = 616/625 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaccagccacggacaaaaagtgagaccctctttagaagaagaaaaggaggaagagtca 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cagatcagccacggacaaaaagtgagaccctctttagaagaagaaaaggaggaagagtca 641

                                                                       
Query: 61  tgcttgtcttggatgttggagagctgctggctttagaggaaaggagggttagactattat 120
           || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tgattgtcttgcatgttggagagctgctggctttagaggaaaggagggttagactattat 581

                                                                       
Query: 121 tgtaaatgtatgggtcacttgcttacaatctggcctgcttgccatcaacagtgcccagtt 180
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tgtaaatgcatggatcacttgcttacaatctggcctgcttgccatcaacagtgcccagtt 521

                                                                       
Query: 181 cctcatttacctcttcatgagcacctaccacaaagcaccattggaactggcttatattgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cctcatttacctcttcatgagcacctaccacaaagcaccattggaactggcttatattgc 461

                                                                       
Query: 241 taggagatgttaacatggaaccaactgatattggccgtgataacataaaaaacaaagttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 taggagatgttaacatggaaccaactgatattggccgtgataacataaaaaacaaagttt 401

                                                                       
Query: 301 agtagctaacaaatcgtaaaagtcagatctgacatttataccacactccctctccaaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agtagctaacaaatcgtaaaagtcagatctgacatttataccacactccctctccaaggc 341

                                                                       
Query: 361 acagggacatctctgaggaagaagtggaaagactgtaagaggcagaagtcactggtgagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acagggacatctctgaggaagaagtggaaagactgtaagaggcagaagtcactggtgagg 281

                                                                       
Query: 421 atgagggagcagtgaaatagggacttctgtatttgacaggcctgctgaactgagaagcac 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atgagggatcagtgaaatagggacttctgtatttgacaggcctgctgaactgagaagcac 221

                                                                       
Query: 481 agagcagccttggtgcaccaaagccaatcagcattctaatggagagtggggagggtgcat 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 agagcagccctggtgcaccaaagccaatcagcattctaatggagagtggggagggtgcat 161

                                                                       
Query: 541 gagtgcccacccctaactggggagttacggacagtaggtggcctctaggggagggagagt 600
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 160 gagtgcccacccctaactggggagttacagacagtaagtggcctctaggggagggagagt 101

                                    
Query: 601 cagtttaagtgtgtggctcctggta 625
           |||||||||||||||||||||||||
Sbjct: 100 cagtttaagtgtgtggctcctggta 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)