Query= MSMg01no521_i04.b1 MSMg01no521_i04.b1 CHROMAT_FILE:
MSMg01no521_i04.b1 PHD_FILE: MSMg01no521_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:52 2005
(561 letters)
>mm_chr6_93898271_93899229
Length = 959
Score = 600 bits (310), Expect = e-175
Identities = 329/336 (97%), Gaps = 3/336 (0%)
Strand = Plus / Minus
Query: 5 gaattcctatatgttgataaatataaaataatggcaatccaagtagggtctaggctccat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gaattcctatatgttgataaatataaaataatggcaatccaagtagggtctaggctccat 275
Query: 65 tgtcctcttttaaaatttaaaacctgatctttgagagagagtatgtgtgtgtgtgtgtgc 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 274 tgtcctcttttaaaatttaaaacctgatctttgagagagag--tgtgtgtgtgtgtctgc 217
Query: 125 gtgcatacgcagttgagacagagtcctactctgtagccctggctgtcctgaaactcactc 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gtgcatatgcagttgagacagagtcctactctgtagccctggctgtcctgaaactcactc 157
Query: 185 tgtacaccaggctggcctcagactcacagagatctgcctgcctgcctccccacaagtgct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tgtacaccaggctggcctcagactcacagagatctgcctgcctgcctccccacaagtgct 97
Query: 245 gagactgaaggcaagcttcaccactccagcttccctcgtacttctttgagacagggtctt 304
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 96 gagactaaaggcaagcttcaccactccagcttccctcatacttctttgagacagggtctt 37
Query: 305 t-caccaaaccaatatggctaggctggctttcccgt 339
| ||||||||||||||||||||||||||||||||||
Sbjct: 36 ttcaccaaaccaatatggctaggctggctttcccgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 959
Length adjustment: 10
Effective length of query: 551
Effective length of database: 949
Effective search space: 522899
Effective search space used: 522899
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_i04.g1 MSMg01no521_i04.g1 CHROMAT_FILE:
MSMg01no521_i04.g1 PHD_FILE: MSMg01no521_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:52 2005
(470 letters)
>mm_chr6_93761657_93762526
Length = 870
Score = 897 bits (464), Expect = 0.0
Identities = 470/474 (99%), Gaps = 4/474 (0%)
Strand = Plus / Plus
Query: 1 ttactttaccttgatcaaatctattggggagtcttatctccgaatttcttgtttcccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttactttaccttgatcaaatctattggggagtcttatctccgaatttcttgtttcccttt 260
Query: 61 gagctttacttcagtatgtcttctgagttttcatcttttttaaaattctatttacacatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctttacttcagtatgtcttctgagttttcatcttttttaaaattctatttacacatt 320
Query: 121 atgaattgcattcattattcattccattgtgttttctctatccccatttcagtatttatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaattgcattcattattcattccattgtgttttctctatccccatttcagtatttatt 380
Query: 181 tagatcttctttcagtttttaaactattttgttatcattttgaaatctttgtcttataca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagatcttctttcagtttttaaactattttgttatcattttgaaatctttgtcttataca 440
Query: 241 ttatctaagttatttctcttggaaatattgttacaggactattaatttttggtggtgacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatctaagttatttctcttggaaatattgttacaggactattaatttttggtggtgacc 500
Query: 301 tattgtgttggttattcatattgtttgtgttttggtgatgagacctaggtctctagagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattgtgttggttattcatattgtttgtgttttggtgatgagacctaggtctctagagtt 560
Query: 361 aggtctttggtaaggtctcttcattcatatatatatatatatatat----cttgtctttt 416
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 aggtctttggtaaggtctcttcattcatatatatatatatatatatatatcttgtctttt 620
Query: 417 ctttgttgaattgttgctttaaatctctgtttacccctattgcaacctgtaggg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttgttgaattgttgctttaaatctctgtttacccctattgcaacctgtaggg 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
