Query= MSMg01no522_p17.b1 MSMg01no522_p17.b1 CHROMAT_FILE:
MSMg01no522_p17.b1 PHD_FILE: MSMg01no522_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:45 2005
(670 letters)
>mm_chr6_100956279_100957348
Length = 1070
Score = 1060 bits (548), Expect = 0.0
Identities = 618/668 (92%), Gaps = 44/668 (6%)
Strand = Plus / Plus
Query: 9 gaattctacagatctagccaaagttactaactgtgccaaaagaggcaaaaaaaaaaaaaa 68
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 211 gaattctacagatctagccaaagttactaattgtaccaaaagaggcaaaaaaaaaaaaaa 270
Query: 69 aaaaaa------gcaacatcagaatccaggattggtactgtgtattgtctgtcatgttgt 122
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaaaaaaaaaaagcaacatcagaatccaggattggtactgtgtattgtctgtcatgtt-- 328
Query: 123 catgtttgggttgcagaactgttggtaagacacacagagaaaggggaaagtgtttgggag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ------tgggttgcagaactgttggtaagacacacagagaaaggggaaagtgtttgggag 382
Query: 183 aagccaccgttaatagacatgatctctggatgtccccagatgctggagtttgtcctggat 242
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagccaccattaatagacatgatctctggatgtccccagatgctg--------------- 427
Query: 243 gtccccagatgctgaagtttgcagacaaagatctcaaagccattattataagctacttta 302
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 --------------aagtttgcagacaaagatctcaaagccattattataagctacttta 473
Query: 303 caagaaaaggatttgtactttagcttggtatcagtctctggagtagcacagggcatcaga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 caagaaaaggatttgtactttagcttggtatcagtctctggagtagcacagggcatcaga 533
Query: 363 aataagagtacacacatatgtatgtctatatctgctagccactatctttttatgaagcca 422
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aataagacttcacacatatgtatgtctatatctgctagccactatctttttatgaagcca 593
Query: 423 tcagtactgggtattaggattaatccaagtatattacatattatgtgcaaaagtggtata 482
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 594 tcagtactgggtattaggattaatccaagtatattacatat-atgtgcaaaagtggtata 652
Query: 483 aagaaaattgttagtttatccaattaaatacacttataaaagtggtttagaaccaaaagc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aagaaaattgttagtttatccaattaaatacacttataaaagtggtttagaaccaaaagc 712
Query: 543 caagagtattcaataacagcaggtcccccttatgaccttttctaaaccaggtactttcca 602
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 713 caagagtattcaataacagcaggtcccccttataaccttttctaaaccaggtactttcca 772
Query: 603 aaggttcatctccaaacaccatggttggattcagtttctaccctctgagcacccggcaaa 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aaggttcatctccaaacaccatggttggattcagtttctaccctctgagcacccggcaaa 832
Query: 663 ggggacca 670
||||||||
Sbjct: 833 ggggacca 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_p17.g1 MSMg01no522_p17.g1 CHROMAT_FILE:
MSMg01no522_p17.g1 PHD_FILE: MSMg01no522_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:45 2005
(341 letters)
>mm_chr6_101142889_101143630
Length = 742
Score = 601 bits (311), Expect = e-176
Identities = 335/343 (97%), Gaps = 3/343 (0%)
Strand = Plus / Minus
Query: 1 tttagtggctttgaggaatgagaagtaggtatagtcaatatgtatgtagaaagaggatag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 542 tttagtggctttgaggaatgagaagtaggtatagtcaatatgtatgtagaaagaggatgg 483
Query: 61 ggaactgcacataatggcagtgactggacccaggca-tcgaggatggaggatgg-gggga 118
|||||||||||||||||||||||||||||||||||| | |||| |||||| ||| ||| |
Sbjct: 482 ggaactgcacataatggcagtgactggacccaggcagt-gaggctggaggctggagggta 424
Query: 119 ctgcatagcttttgttatttggttcactcatcttgagggctcaaccaatcatgtgccaag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctgcatagcttttgttatttggttcactcatcttgagggctcaaccaatcatgtgccaag 364
Query: 179 gatcttctacacagcctgtgctcagtgactccctggagccattagaataaagggaactgc 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gatcttctacacagcccgtgctcagtgactccctggagccattagaataaagggaactgc 304
Query: 239 ttcgtggtggccttcaaaactgtgtgtccctgagccccttctagtattccccataagctt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttcgtggtggccttcaaaactgtgtgtccctgagccccttctagtattccccataagctt 244
Query: 299 cctgccattattcatctgccctggtcctggggtcccctttcag 341
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cctgccattattcatctgccctggtcctggggtcccctttcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 742
Length adjustment: 9
Effective length of query: 332
Effective length of database: 733
Effective search space: 243356
Effective search space used: 243356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
