Query= MSMg01no524_a23.b1 MSMg01no524_a23.b1 CHROMAT_FILE:
MSMg01no524_a23.b1 PHD_FILE: MSMg01no524_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:12 2005
(678 letters)
>mm_chr6_46093951_46095028
Length = 1078
Score = 1062 bits (549), Expect = 0.0
Identities = 654/721 (90%), Gaps = 55/721 (7%)
Strand = Plus / Minus
Query: 6 gaattccacagattttgtttttcctgctttaaaccaaatcctatcttcattgacattttc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 gaattccacagattttgtttttcctgctttaaaccaaatcctatcttcattgacattttc 823
Query: 66 tctctgaggcaatttcatatgaacttattatctctt------------------------ 101
||||||||||||||||||||||||||||||||||||
Sbjct: 822 tctctgaggcaatttcatatgaacttattatctctttgcttctgcttctgcttctgcttc 763
Query: 102 ------------tgcttctgcttctgcttctgcttctgcttctgcttttctgcttt---- 145
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tgcttctgcttctgcttctgcttctgcttctgcttctgcttctgcttttctgcttttctg 703
Query: 146 ------tgtttttccccttcctctctgccccagtcgtcctttttggcccaaagcccacca 199
|| |||||| ||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 702 cttttctgcttttcctcttcctctctgccacagtcgtcctttttggcccaaggcccacca 643
Query: 200 tctctggacctttcagaactcttttatccttaggtttagcctctgttatcttgccactat 259
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tctctgaacctttcagaactcttttatccttaggtttagcctctgttatcttgccactat 583
Query: 260 tacagctcaattatcttaaatgtcaataatcaattttctgctctcaaatgttttaaagtt 319
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 582 tacagatcaattatcttaaatgtcaataatcaattttctgctctcaaatgctttaaagtt 523
Query: 320 aatgccttctttagaaactatacctcacagtgaaccccagaaaaacctactccttttgag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aatgccttctttagaaactatacctcacagtgaaccccagaaaaacctactccttttgag 463
Query: 380 gctgcacccatatgtttt-aaaaagcacacaaagcttgagaatagatgttgctgtgtcac 438
|||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 462 gctgca-ccatatgttttaaaaaagcacacaaagcttgagaatggatgttgatgtgtcac 404
Query: 439 tacaccccatctgaattatggagaaaatgtgtccttaaatttctttcatacttgtgacta 498
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 403 tacaccccatctgaattatggagaaaatgtgtccttaaatttctttcacacttgtgacta 344
Query: 499 caggtaaagaggtatctaaagtgtacatattaatcaaacaataacaataaatcataaata 558
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 343 caggtaaagaggtatctaaagtgtac-----aatcaaacaataataataaatcataaata 289
Query: 559 tatttatgttaaatattttttgtttacatatagcttttatca-ttttattggactgaagc 617
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 288 tatttatgttaaata-tttttgtttacatatagcttttatcatttttattggactgaagc 230
Query: 618 aaatttatattctaaaaatgtggacttgcctgtttatttttatataaagagttcaatctt 677
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 229 aaatttatattctaaaaatgtggacttgcctgcttatttttatataaagagttcaatctt 170
Query: 678 a 678
|
Sbjct: 169 a 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 15
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_a23.g1 MSMg01no524_a23.g1 CHROMAT_FILE:
MSMg01no524_a23.g1 PHD_FILE: MSMg01no524_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:12 2005
(626 letters)
>mm_chr6_45930396_45931421
Length = 1026
Score = 1203 bits (622), Expect = 0.0
Identities = 625/626 (99%)
Strand = Plus / Plus
Query: 1 ttttcactggacagtaacattatcagaaagaaagcaaccctagtttatttgtatttttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcactggacagtaacattatcagaaagaaagcaaccctagtttatttgtatttttga 260
Query: 61 tttacaaagatataataaaaaatagcttccatgtggattttcatcaaatgaattttatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttacaaagatataataaaaaatagcttccatgtggattttcatcaaatgaattttatgc 320
Query: 121 taattttcagaaagttcatattatttatgcattattaggcacgtttgattcataacatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattttcagaaagttcatattatttatgcattattaggcacgtttgattcataacatac 380
Query: 181 ttagaaaaagattgttctgattttcaggtgtgctatgagttgttagtgggtgggagagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagaaaaagattgttctgattttcaggtgtgctatgagttgttagtgggtgggagagga 440
Query: 241 aagagaaaatggaatctgtaacaatgtacatgcatatgaatggccaattctggaagcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagaaaatggaatctgtaacaatgtacatgcatatgaatggccaattctggaagcaga 500
Query: 301 gggtactttgaatttcattttcagttttgatattgaataatgtagttttggtaatgtaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtactttgaatttcattttcagttttgatattgaataatgtagttttggtaatgtaat 560
Query: 361 ttgaaatttactaacatctttctatgtccagatttggttcagtgagcttactacataatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgaaatttactaacatctttctatgtccagatttggttcagtgagcttactacataatg 620
Query: 421 aactactcataactcattgcacattataggttttcttaaagcaattcaatagtaataaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactactcataactcattgcacattataggttttcttaaagcaattcaatagtaataaaa 680
Query: 481 tatatacaggaacaaatccatctttcttatgaatgtcaataaatatttaatctcaattta 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 tatatacaggaacaaatccatctttcttctgaatgtcaataaatatttaatctcaattta 740
Query: 541 gtccaaaataactgttaaaggaatgtcttagtaacttaataaccatagtgaaagattatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtccaaaataactgttaaaggaatgtcttagtaacttaataaccatagtgaaagattatc 800
Query: 601 ataataagcttcctaactttaatctt 626
||||||||||||||||||||||||||
Sbjct: 801 ataataagcttcctaactttaatctt 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
