BAC Information

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BAC

Clone NameMSMg01-524J21
Chromosome6 (Build37)
Map Location 42,526,438 - 42,527,030
singlet/doubletsinglet
Overlap genenone
Upstream geneEphb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896
Downstream geneEapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524J21.T7 (MSMg01no524_j21.b1)MSMg01-524J21.TJ (MSMg01no524_j21.g1)
ACCAG594651AG594652
length754772
length of high quality
(start - end)		590 (44 - 633)593 (70 - 662)
definitionCHROMAT_FILE: MSMg01no524_j21.b1 PHD_FILE: MSMg01no524_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:56 2005CHROMAT_FILE: MSMg01no524_j21.g1 PHD_FILE: MSMg01no524_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGATGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAGA
TGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATG
GATAGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGA
ACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCCAACCTAG
AATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCTAGAAG
AATGAAGACTNGAGTGTGAACACTATGCCCCTCCCTAGAANTTGGAACAA
ACAC

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGAATAAACCTGAACAAAATAAGAATGATAG
TTCTGTCTTAGGAGAGCAAAAGGTGGAGTTAAAGCTCTTGTTTCCCCCAG
CACACAGGGCAATAAATGTAGACCTTGTAAATTGGTCAAATCGTTGGTTG
CAATGAGCTCATGTTGGCACACTCAAGCAGGAGTCTCCATTGGAAGGTGC
TGATGTCTGCTGTGATCTGTACTTCAATGTCTATAGTAAATACCAACTCA
GAGGGAGGAGCAAGCCTGCTCCAGGCAGCCCTTCCTAAGGCTACTCTTTT
CCTTCACAGGGTGAAACTCACTGATGCAAATTGCTCAGCTGGGTTTTAAT
TAAATGTCTGCTCCCTGGGGTTTCCTGACTACCTACTTCTCATCCTTCTC
TTCCCTTTAGTCACTTCTCTTTTCCCACAACACCATGCATATAGGCCCAT
GGTGGAGAACGCTGACAATAATGAGGCCCCAGGAACAGTTCAAAGGCTGC
TGTAAAACTTTGAAAATTAAGCCCTGGAGGTTTCAAGAGCTGTAATTAGA
ATCCATGGTTAGAAGTGACCTAAGATAACCTTGCCATCAAGCTGGAAATT
TCCTATGTCCACAGGTCAGCTGGAGCCTGGGTGGGAGTCAGTGGCCTTTC
AGACCCAAGAGTGAACAGAGTCCTCCCGGAGCCATGCCCCAGATTTCTCT
AACAGAACAGTTAGGGTGCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_j21.g1 MSMg01no524_j21.g1 CHROMAT_FILE:
MSMg01no524_j21.g1 PHD_FILE: MSMg01no524_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:57 2005
         (593 letters)



>mm_chr6_42526238_42527230
          Length = 993

 Score = 1100 bits (569), Expect = 0.0
 Identities = 587/593 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaataaacctgaacaaaataagaatgatagttctgtcttaggagagcaaaaggtggagt 60
           |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaataaacccgaacaaagtaagaatgatagttctgtcttaggagagcaaaaggtggagt 260

                                                                       
Query: 61  taaagctcttgtttcccccagcacacagggcaataaatgtagaccttgtaaattggtcaa 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 taaagctcttgtttcccccagcacacagggcaatagatgtagaccttgtaaattggtcaa 320

                                                                       
Query: 121 atcgttggttgcaatgagctcatgttggcacactcaagcaggagtctccattggaaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcgttggttgcaatgagctcatgttggcacactcaagcaggagtctccattggaaggtg 380

                                                                       
Query: 181 ctgatgtctgctgtgatctgtacttcaatgtctatagtaaataccaactcagagggagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgatgtctgctgtgatctgtacttcaatgtctatagtaaataccaactcagagggagga 440

                                                                       
Query: 241 gcaagcctgctccaggcagcccttcctaaggctactcttttccttcacagggtgaaactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaagcctgctccaggcagcccttcctaaggctactcttttccttcacagggtgaaactc 500

                                                                       
Query: 301 actgatgcaaattgctcagctgggttttaattaaatgtctgctccctggggtttcctgac 360
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 501 actgatgcaaattgctcagctgggttttaattaaacatctgctccctggggtttcctgac 560

                                                                       
Query: 361 tacctacttctcatccttctcttccctttagtcacttctcttttcccacaacaccatgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacctacttctcatccttctcttccctttagtcacttctcttttcccacaacaccatgca 620

                                                                       
Query: 421 tataggcccatggtggagaacgctgacaataatgaggccccaggaacagttcaaaggctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tataggcccatggtggagaacgctgacaataatgaggccccaggaacagttcaaaggctg 680

                                                                       
Query: 481 ctgtaaaactttgaaaattaagccctggaggtttcaagagctgtaattagaatccatggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtaaaactttgaaaattaagccctggaggtttcaagagctgtaattagaatccatggt 740

                                                                
Query: 541 tagaagtgacctaagataaccttgccatcaagctggaaatttcctatgtccac 593
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 741 tagaagtgacctaagataaccctgccatcaagctggaaatttcctatgtccac 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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